PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG553900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 206aa    MW: 21375.1 Da    PI: 6.5963
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG553900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.7e-054971123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ykC+ C + F++   L  H+++H
  Pavir.1NG553900.1.p 49 YKCTFCRRGFPTAQALGGHMNVH 71
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.79E-64675No hitNo description
Gene3DG3DSA:3.30.160.604.0E-44773IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.2E-64973IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5334976IPR007087Zinc finger, C2H2
SMARTSM003550.00614971IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDLSQETKDN KASPSGEAPD DDKELQKQRA GSSGGGDDND DDEGTRQPYK CTFCRRGFPT  60
AQALGGHMNV HRRHRGRPTT GAAAVQGITS SSRSGCYEQQ QQPYHSTTAA TTVVAFGGQT  120
HPASVVASSM AAGGAALLHA ERHQQQPHEL RLFGRDCAAG GRAKEGGAAG DARRDRCYAK  180
DGDGGGDHGG AEELDLELRL GGAGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG553900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9718338e-49EU971833.1 Zea mays clone 371263 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823363.15e-69zinc finger protein 6-like
TrEMBLA0A3L6RQR78e-69A0A3L6RQR7_PANMI; Zinc finger protein 7-like
STRINGPavir.J13026.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.15e-11C2H2 family protein