PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1NG474200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 20658.9 Da PI: 4.1398 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.2 | 2.4e-14 | 2 | 44 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g Pavir.1NG474200.1.p 2 RSWGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 44 57**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.5E-25 | 1 | 52 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-25 | 1 | 58 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.59E-13 | 1 | 54 | No hit | No description |
PROSITE profile | PS51032 | 18.413 | 1 | 52 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.6E-8 | 2 | 44 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-15 | 2 | 53 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MRSWGSWVSE IRAPNQKTRI WLGSYSTAEA AARAYDAALL CLKGSAADLN FPVHLPFHIP 60 AAAMSPKSIQ RVAAAAAASA GGCSPLQAGA PCYPAAAAIN AATTPPCSYG DTSSGVSSPE 120 TGSGAGQYYE TAHDDVDVTG DADLAALADI EAFFQSPKCM EYALMDPCSS FFASAPMATD 180 ASNEWEEGEI NLWSFSSVN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1NG474200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT083532 | 1e-112 | BT083532.1 Zea mays full-length cDNA clone ZM_BFb0008I08 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954039.1 | 1e-107 | ethylene-responsive transcription factor ERF014 | ||||
TrEMBL | A0A368PRU6 | 1e-106 | A0A368PRU6_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J29574.1.p | 1e-114 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3197 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21910.1 | 1e-23 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1NG474200.1.p |