PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.1NG383100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 476aa MW: 50787.2 Da PI: 6.0256 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.3 | 5.9e-05 | 16 | 33 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F+++ +L H Pavir.1NG383100.1.p 16 VCKNCGKEFTSWKSLLDH 33 6***************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.286 | 15 | 42 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 170 | 15 | 35 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.51E-8 | 173 | 196 | No hit | No description |
PROSITE profile | PS50157 | 10.221 | 174 | 201 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.7E-9 | 174 | 198 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 174 | 196 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 176 | 196 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.51E-8 | 288 | 315 | No hit | No description |
Pfam | PF13912 | 6.4E-13 | 292 | 316 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.995 | 293 | 315 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.6 | 293 | 315 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 295 | 315 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 476 aa Download sequence Send to blast |
MYALRTNPGR LKNCRVCKNC GKEFTSWKSL LDHGRCNYDE EEGDMDGDAA NDREDLALAA 60 GWSKEKRTRC AKVMIVGNGS ITTVEEQLPA PSSEEEDLAN FLVMLSSSAS SAARPHVIVE 120 VDQEPCATKN EKRNHQLLVP QPISMVTPVV PQLKLLAPPQ VLPHHVSTVP RGMFECKACK 180 KVFTSHQALG GHRASHKKVK GCFAAKLESN RIDPPQLIVA SANDKVVGDA IPATVGTEQN 240 ITGVDGNVEG NTVNAETAGV VVMATAAPEM AADEVPAATS SAVAPFKKKE KVHECSICHR 300 VFMSGQALGG HKRCHWLTTG PGDPTGTVAK LQPFVTQDHV MHAMCQQLTL GHPMFDASDP 360 FLDFNVPTNP SAEPAATRQA AELNDSVLSL NAPASLYMHS WAGHSNASNM NNTATSGHDD 420 AGDATAMEDE ADSTSAKRAK ISDLKDMNMA GETSPWLQVG IGLPSEINEE KATQA* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.1NG383100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822488.1 | 0.0 | uncharacterized protein LOC112898374 | ||||
TrEMBL | A0A3L6QHZ8 | 0.0 | A0A3L6QHZ8_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Aa00996.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G19580.2 | 3e-17 | zinc-finger protein 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.1NG383100.1.p |