PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG383100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 476aa    MW: 50787.2 Da    PI: 6.0256
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG383100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-051633219
                         EETTTTEEESSHHHHHHH CS
              zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                         +C++Cgk F+++ +L  H
  Pavir.1NG383100.1.p 16 VCKNCGKEFTSWKSLLDH 33
                         6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.2861542IPR007087Zinc finger, C2H2
SMARTSM003551701535IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.51E-8173196No hitNo description
PROSITE profilePS5015710.221174201IPR007087Zinc finger, C2H2
PfamPF139123.7E-9174198IPR007087Zinc finger, C2H2
SMARTSM003550.13174196IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SuperFamilySSF576671.51E-8288315No hitNo description
PfamPF139126.4E-13292316IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995293315IPR007087Zinc finger, C2H2
SMARTSM003551.6293315IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280295315IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MYALRTNPGR LKNCRVCKNC GKEFTSWKSL LDHGRCNYDE EEGDMDGDAA NDREDLALAA  60
GWSKEKRTRC AKVMIVGNGS ITTVEEQLPA PSSEEEDLAN FLVMLSSSAS SAARPHVIVE  120
VDQEPCATKN EKRNHQLLVP QPISMVTPVV PQLKLLAPPQ VLPHHVSTVP RGMFECKACK  180
KVFTSHQALG GHRASHKKVK GCFAAKLESN RIDPPQLIVA SANDKVVGDA IPATVGTEQN  240
ITGVDGNVEG NTVNAETAGV VVMATAAPEM AADEVPAATS SAVAPFKKKE KVHECSICHR  300
VFMSGQALGG HKRCHWLTTG PGDPTGTVAK LQPFVTQDHV MHAMCQQLTL GHPMFDASDP  360
FLDFNVPTNP SAEPAATRQA AELNDSVLSL NAPASLYMHS WAGHSNASNM NNTATSGHDD  420
AGDATAMEDE ADSTSAKRAK ISDLKDMNMA GETSPWLQVG IGLPSEINEE KATQA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG383100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822488.10.0uncharacterized protein LOC112898374
TrEMBLA0A3L6QHZ80.0A0A3L6QHZ8_PANMI; Uncharacterized protein
STRINGPavir.Aa00996.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.23e-17zinc-finger protein 2