PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG142600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 396aa    MW: 41174.6 Da    PI: 7.6641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG142600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-13118168255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++ h ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  Pavir.1NG142600.1.p 118 KMLHIAVERNRRKQMNEHLAVLRSLMPCF---YIKRGDQASIIGGVVDYIKELQ 168
                          57799***********************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-17115192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.078116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12118179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-13118172No hitNo description
SMARTSM003536.2E-12122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MGDGAMCELL VDDHSELQHQ SSGAEDLFSI LETWEECMTG GGSGGSAHAA AMPAHSQSST  60
GGSESAGAVA GARPTASSRR RAGDEGIGVG RGAPAQKKQK GSSTAAAQDA AADEGGAKML  120
HIAVERNRRK QMNEHLAVLR SLMPCFYIKR GDQASIIGGV VDYIKELQQV LRSLEAKKHR  180
KACAEQVLSP RPAMPAASPR PLLIKSTPPL SPRVAVPISP RTPTPGSPYK QPSGGGGGSG  240
AAAGSRPPHP AAAAYMMPSP AMTPTTSSSS SSYAHDQQQQ QHYPTTQLYL PTLDSLVTEL  300
AARAAGGRPA AAGLTLPDVK VEFAGPNLVL KTVSRRAPGQ ALKIIAALES LSLEILHVSV  360
STLDDTMVHS FTIKIGIECE LSAEELVQEI QQTFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17899RRRAGDEGIGVGRGAPAQKKQK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.179402e-73stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG142600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369011e-103BT036901.1 Zea mays full-length cDNA clone ZM_BFb0146M03 mRNA, complete cds.
GenBankEU9758961e-103EU975896.1 Zea mays clone 504696 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799200.10.0transcription factor SPEECHLESS-like
TrEMBLA0A3L6QHE70.0A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like
STRINGPavir.Aa02723.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.12e-37bHLH family protein