PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG107800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 431aa MW: 47041.5 Da PI: 8.7943

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG107800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	22.4	2.7e-07	149	180	3	34
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 ++kr rr+++NRe+ + sR+RK+a ++ Le+ Pavir.1NG107800.1.p 149 DVKRMRRMMSNRESDQCSRKRKQAHLADLETQ 180 68***************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.8E-7	151	221	No hit	No description
SuperFamily	SSF57959	1.46E-5	151	193	No hit	No description
CDD	cd14702	4.61E-8	152	213	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MPSLITIKIS MINALKNHTV QTVNFVVPVF RLLTCCLKVA QSFAFCVDTA IVVPNIVGLV 60 ISTVQICIYL WILVSPRKTR NGSIPNHNVR HPAVSTTMES QSAICAVASP TSSTNISLKK 120 SQTLGGTSGS DYDTKFEGAP FEQSTNPQDV KRMRRMMSNR ESDQCSRKRK QAHLADLETQ 180 ENPKRSRTSY LRRKGPSEQV DQVEQLTDAN QQLTTSVTVT DNRILKSDVR ALRVKLAVDM 240 VARGALASPA SSSKISLKRS QTLRGTSSLD YDTKFEGAPF EQGTNPQDVK RMQRMVSYRE 300 SDQCSEQVDH VEQLTDANQQ LTTAVTVRDN RKLKSDVRAK VKLAEDVVAC GALSCGLGSL 360 GLSSPVLNPQ QCRVPDVLPV LEVPADDRCF TGLSPTVQVQ NSSLQSLSLE SFDNRMTSEV 420 TSCAGAGVDV *

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MPSLITIKIS MINALKNHTV QTVNFVVPVF RLLTCCLKVA QSFAFCVDTA IVVPNIVGLV  60
ISTVQICIYL WILVSPRKTR NGSIPNHNVR HPAVSTTMES QSAICAVASP TSSTNISLKK  120
SQTLGGTSGS DYDTKFEGAP FEQSTNPQDV KRMRRMMSNR ESDQCSRKRK QAHLADLETQ  180
ENPKRSRTSY LRRKGPSEQV DQVEQLTDAN QQLTTSVTVT DNRILKSDVR ALRVKLAVDM  240
VARGALASPA SSSKISLKRS QTLRGTSSLD YDTKFEGAPF EQGTNPQDVK RMQRMVSYRE  300
SDQCSEQVDH VEQLTDANQQ LTTAVTVRDN RKLKSDVRAK VKLAEDVVAC GALSCGLGSL  360
GLSSPVLNPQ QCRVPDVLPV LEVPADDRCF TGLSPTVQVQ NSSLQSLSLE SFDNRMTSEV  420
TSCAGAGVDV *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	170	SRKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.9400	0.0	callus

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269\|PubMed:11133985}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269\|PubMed:11133985}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG107800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951740.1	1e-64	bZIP transcription factor RISBZ4 isoform X1
Refseq	XP_021315644.1	1e-64	basic leucine zipper 9-like isoform X1
Swissprot	Q6H500	2e-59	RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBL	A0A3L6QKU8	2e-64	A0A3L6QKU8_PANMI; Basic leucine zipper 9-like isoform X1
STRING	Pavir.Aa03143.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	2e-23	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Pavir.1NG107800.1.p

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]