PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.1NG069600.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 314aa MW: 33138.8 Da PI: 5.3884

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.1NG069600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	53	7.2e-17	142	194	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l + ++ Pavir.1NG069600.2.p 142 DVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 194 68***************************************9995554...44443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.8E-18	140	204	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.185	142	194	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-13	143	195	No hit	No description
Pfam	PF00170	3.1E-14	143	192	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.4E-13	144	195	No hit	No description
CDD	cd14702	1.23E-22	145	195	No hit	No description
PROSITE pattern	PS00036	0	147	162	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MKKCASELEL EAFIRSRDDA AAAAAAAEHK PGHDIAAQAA FAAGVFSPGD LSGFSFADSN 60 TLNGSIPNHL WSHNHNVRHP AVSTTIESQS SICAAAASPT SATNLYLKES QTLGGTSGSD 120 SDSESLLDIE GGPCEQSTNP QDVKRMRRMV SNRESARRSR KRKQAHLADL ETQVDQLRGE 180 NASLFKQLTD ANQQFTTAVT DNRILKSDVE ALRVKVKLAE DMVARGALSC GLGSLGLSPV 240 LNPRQACRGP DVLSGLDFTG GDDACFAGLS PTEQVQNSPL QSLASLENRM NSEVTSCGGP 300 GVDVWPWDAG LSK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	162	RRSRKRK
2	156	163	RRSRKRKQ
3	158	163	SRKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.1107	0.0	callus\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269\|PubMed:11133985}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269\|PubMed:11133985}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.1NG069600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT034689	0.0	BT034689.1 Zea mays full-length cDNA clone ZM_BFb0011L11 mRNA, complete cds.
GenBank	JX469922	0.0	JX469922.1 Zea mays subsp. mays clone UT3178 bZIP-type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951740.1	0.0	bZIP transcription factor RISBZ4 isoform X1
Swissprot	Q6H500	1e-136	RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBL	K3YU95	0.0	K3YU95_SETIT; Uncharacterized protein
STRING	Pavir.Aa03364.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	2e-41	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Pavir.1NG069600.2.p

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]