PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG445000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 363aa    MW: 39166 Da    PI: 4.7758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG445000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.13e-22431751128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk. 88 
                          lp Gf F P+d ++v +yL +++ g++l l+  i + d +++ Pw+L  k ++ +++ +fF+  + ++ +g+r++r  t+ g+W    + 
  Pavir.1KG445000.1.p  43 LPLGFLFAPEDGDVVEQYLLRRILGQPLLLDGLILDDDPLSAPPWELL-KRNGCKDDAFFFALGQARSGKGSRQKRtCTDGGFWIGERNc 131
                          699************************999889**************7.445556799******************8899****955442 PP

                  NAM  89 .dkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           d e           + e+ + kk L f +g ++   +t Wvmhey++
  Pavir.1KG445000.1.p 132 vDGEK--LrvpgpggGAEVAWRKKALSFQEGGEKG--STGWVMHEYAI 175
                          22222..133577877777999******9887766..8********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510056.219125IPR003441NAC domain
SuperFamilySSF1019412.09E-2836194IPR003441NAC domain
PROSITE profilePS5100527.35643194IPR003441NAC domain
PfamPF023658.7E-1444174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MHEYAVTAPE DLVRSPLRLY HIRRSSYGRK QSGAMEVPRA LGLPLGFLFA PEDGDVVEQY  60
LLRRILGQPL LLDGLILDDD PLSAPPWELL KRNGCKDDAF FFALGQARSG KGSRQKRTCT  120
DGGFWIGERN CVDGEKLRVP GPGGGAEVAW RKKALSFQEG GEKGSTGWVM HEYAITALDH  180
LAESQMRLYR IRFSGHGKKR KRGEADSLAD EAAPAEDRRR VAEDALLDIS ASLPSCSSSM  240
AMVDHAYGSC PIDADQLAAP VSVPANQQDL NPGITVDTSL DLGFLDNFDI DEFMRSLGDL  300
PSTSTDPCVL PALTDTGAYL DADAVGSSFF GQMGSQYNGV GTGQMASSSL HRGCMEPADS  360
FI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202GKKRKRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG445000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813463.10.0uncharacterized protein LOC112890817
TrEMBLA0A2T7E0R60.0A0A2T7E0R6_9POAL; Uncharacterized protein
STRINGPavir.J34688.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.11e-09NAC domain containing protein 4