PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.1KG195600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 105aa MW: 12144.8 Da PI: 9.1725 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40.7 | 7.9e-13 | 12 | 98 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek......dgkwevtkleleHnH 87 +++YA+++GF ++ + k + r+ Cs++g+ k +++ r++ +++tgCk ++k+k + +gk +++++ +eHnH Pavir.1KG195600.1.p 12 LFRKYAEKAGFPIKWDGAKGT-------VRDISCSMSGHWPYFKPG-QQRVRNKFSKKTGCKVHMKLKDVEtdgeeySGKVMIEQVCTEHNH 95 699**********99875554.......7899********999888.999*****************986554444578899********** PP FAR1 88 ela 90 +la Pavir.1KG195600.1.p 96 PLA 98 *97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-7 | 12 | 98 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MFFDSEEEAY ELFRKYAEKA GFPIKWDGAK GTVRDISCSM SGHWPYFKPG QQRVRNKFSK 60 KTGCKVHMKL KDVETDGEEY SGKVMIEQVC TEHNHPLAKK HRGW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.1KG195600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304148.1 | 4e-38 | uncharacterized protein LOC8085124 isoform X1 | ||||
Refseq | XP_021304149.1 | 4e-38 | uncharacterized protein LOC8085124 isoform X1 | ||||
Refseq | XP_021304150.1 | 5e-38 | uncharacterized protein LOC8085124 isoform X2 | ||||
TrEMBL | A0A1Z5R3I0 | 1e-36 | A0A1Z5R3I0_SORBI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25347 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.2 | 3e-06 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.1KG195600.1.p |