PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG126100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 170aa    MW: 18568.6 Da    PI: 10.5634
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG126100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.83.1e-1588149162
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                          +ke kr +r+ +NR++A+  R+RKka++  Le kvk Le+ N+++ ++l++l++e + l++ 
  Pavir.1KG126100.1.p  88 DKEHKRLKRLLRNRVSAQQARERKKAYLTDLEVKVKDLEKNNSEMEEKLSTLQNENQMLRQI 149
                          5899*****************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-1488152IPR004827Basic-leucine zipper domain
PfamPF001704.7E-1489150IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.18590153IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.25E-1392150No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-1692152No hitNo description
CDDcd147043.61E-1593144No hitNo description
PROSITE patternPS00036095110IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MQEQAASSRP SRSSSERSSS SAHHIDMEVK EGMESDEEIR RVPELGLELP GGASTSGREA  60
GAGAGGPERA QSSTAQASSR RRVRSPADKE HKRLKRLLRN RVSAQQARER KKAYLTDLEV  120
KVKDLEKNNS EMEEKLSTLQ NENQMLRQIL KNTTVSRRGP GSTAGGEGQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.138717e-77leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269|PubMed:15178762}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG126100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0633531e-150BT063353.1 Zea mays full-length cDNA clone ZM_BFc0055M22 mRNA, complete cds.
GenBankKJ7269451e-150KJ726945.1 Zea mays clone pUT3491 bZIP transcription factor (bZIP61) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951525.11e-100transcription factor HY5
SwissprotQ9SM509e-54HY5_SOLLC; Transcription factor HY5
TrEMBLK3YW782e-98K3YW78_SETIT; Uncharacterized protein
STRINGSi018524m4e-99(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.12e-39bZIP family protein
Publications ? help Back to Top
  1. Wang F, et al.
    Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato.
    Plant Physiol., 2018. 176(2): p. 1311-1326
    [PMID:29146776]
  2. Liu CC, et al.
    The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato.
    Plant Cell Environ., 2018. 41(8): p. 1762-1775
    [PMID:29566255]