PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG077100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 299aa    MW: 31771.3 Da    PI: 5.1702
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG077100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.26.5e-17128180358
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                          ++kr rr+ +NRe+ArrsR+RK+a ++ Le+ v++L +eN +L k+l    +  ++
  Pavir.1KG077100.1.p 128 DVKRMRRMVSNRESARRSRKRKQAHLADLETQVDQLRGENASLFKQLT---DANQQ 180
                          68***************************************9995554...44443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.4E-13124181No hitNo description
SMARTSM003387.8E-18126190IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.185128180IPR004827Basic-leucine zipper domain
PfamPF001701.7E-14129178IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.68E-13129181No hitNo description
CDDcd147024.09E-23131181No hitNo description
PROSITE patternPS000360133148IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKKCASELQL EAFIRSPDDH DVAAQAAFAA GLFSPGDLSG FSFADSNTLN GSIPNHIWSH  60
NHNVRHPAVS TTIESQSSIC AAASPTSATN LYLKESQTLG GTSGSDSDSE SQLDIEGGPC  120
EQSTNPQDVK RMRRMVSNRE SARRSRKRKQ AHLADLETQV DQLRGENASL FKQLTDANQQ  180
FTTAVTDNRI LKSDVEALRV KVKLAEDMVA RGALSCGLGS LGLSPVLNPR QPCRGPDVLP  240
GLDFAGDDAC FAGLSPAEQV QNSPLQSIAS LENRMTSEVT SCGGAGVDVW PWDGGLSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148RRSRKRK
2142149RRSRKRKQ
3144149SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.11070.0callus| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG077100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0346890.0BT034689.1 Zea mays full-length cDNA clone ZM_BFb0011L11 mRNA, complete cds.
GenBankJX4699220.0JX469922.1 Zea mays subsp. mays clone UT3178 bZIP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951740.10.0bZIP transcription factor RISBZ4 isoform X1
SwissprotQ6H5001e-140RSBZ4_ORYSJ; bZIP transcription factor RISBZ4
TrEMBLK3YU950.0K3YU95_SETIT; Uncharacterized protein
STRINGPavir.Ab00505.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-41basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]