PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.J01072.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 432aa    MW: 47445.5 Da    PI: 8.1825
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.J01072.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98e-093333701954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+  ++  LA+++gL+ +qV++WF N R +
  Pahal.J01072.1 333 FEHflHPYPNDVDKHILARQTGLSRSQVSNWFINARVR 370
                     554459******************************88 PP
2BELL101.85.2e-33188256472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     el+++k++Lls++eeVd+rY++y+eql++v  sFeavag g++++Yt+lAl+a+SrhFrcL+da++ q+
  Pahal.J01072.1 188 ELERRKSRLLSMVEEVDRRYRRYREQLRAVEVSFEAVAGAGASQVYTRLALRAMSRHFRCLRDALVAQV 256
                     899***************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.3E-47120254IPR006563POX domain
PfamPF075261.1E-40122252IPR006563POX domain
PROSITE profilePS5007111.71311374IPR001356Homeobox domain
SMARTSM003896.5E-9314378IPR001356Homeobox domain
CDDcd000861.33E-11314375No hitNo description
SuperFamilySSF466894.71E-17315380IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27317380IPR009057Homeodomain-like
PfamPF059201.9E-17331370IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MAVHHPHLLD FSPPPSTVAM EAPPPSFDHG QLLALHVDGS DDMLSLGGGL PTTAHRVLAD  60
DTAAWPPPQG AVSLSLCNYG TAGGSSSLFG HDQQQFAVPP AAVSLQAPNN HLPWPSVQPF  120
QLRSSKYLDP VQDLLTDFCS LEVEGDLHAM NGVNKRAPKA AGKWEDVEPS WSSGLWGHPS  180
LSSMDLLELE RRKSRLLSMV EEVDRRYRRY REQLRAVEVS FEAVAGAGAS QVYTRLALRA  240
MSRHFRCLRD ALVAQVRALR KAMGERQQDG YGGGGPAAAG ATKGETPRLK VLDQRLRQQR  300
AFQQHPGGIE NYPWRPQRGL PERAVAVLRA WLFEHFLHPY PNDVDKHILA RQTGLSRSQV  360
SNWFINARVR LWKPMIEDMY AGEVKQQRSE SEATTQNPTS AGDGVAVKAE HNATAGAMGG  420
ESHHHFRSAT L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-15320377562Homeobox protein Meis2
4xrm_B4e-15320377562Homeobox protein Meis2
4xrs_A3e-15320377158Homeobox protein Meis1
4xrs_B3e-15320377158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0399090.0BT039909.1 Zea mays full-length cDNA clone ZM_BFc0050K05 mRNA, complete cds.
GenBankKJ7282860.0KJ728286.1 Zea mays clone pUT6565 HB transcription factor (HB38) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813822.10.0homeobox protein BEL1 homolog
SwissprotQ388971e-93BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A2S3HMF80.0A0A2S3HMF8_9POAL; Uncharacterized protein
STRINGSi006303m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-79TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]