PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I02568.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 227aa MW: 23825.2 Da PI: 9.313 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.4 | 0.00011 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+++ L H ++H Pahal.I02568.1 78 HRCSVCGKPFPSHQALGGHKSSH 100 79**************9999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.04E-8 | 78 | 100 | No hit | No description |
Pfam | PF13912 | 2.4E-10 | 78 | 102 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.041 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.115 | 78 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.04E-8 | 133 | 160 | No hit | No description |
Pfam | PF13912 | 3.3E-13 | 137 | 162 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 138 | 160 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 138 | 160 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 140 | 160 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MAAMVEAARD APATPWPRPA ECPVSAREGS AEGWARRKRS RRHLRRAAPT EEEHLALCLL 60 MLARGQRDAR APAQQQEHRC SVCGKPFPSH QALGGHKSSH RARPPPAAAP TPPVAAVSSA 120 SPAASSSTSG AGSSSRVHEC SVCRKTFPTG QALGGHKRCH YEGAGGATTI VASTTPGLMS 180 CRGFDLNVPA LPDMLTAGDR CMPAAEEEEE VLSPLAFKKP RLMILA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794414.1 | 1e-161 | zinc finger protein 1-like | ||||
Swissprot | Q42430 | 3e-45 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | A0A2S3IKR2 | 1e-159 | A0A2S3IKR2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J15423.1.p | 1e-102 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 3e-35 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I02568.1 |