PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02531.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 411aa    MW: 47243.4 Da    PI: 9.7947
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02531.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.43e-19114202198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkvl  +    + rl +p kf++++ g     kt++le+++g +++v++   k+ +++vl++GWk F+ a++Lk  Df+vFk+dg+ +   +v 
  Pahal.I02531.1 114 FFKVL--AGD-FRERLGIPDKFVQHIRGR--IAKTVKLESRTGCTFDVEV--AKSLDKVVLQTGWKAFACAHDLKMWDFLVFKYDGTPRL--KVL 199
                     66666..344.4567********888777..6679***************..********************************985555..888 PP

                     EE- CS
              B3  96 vfr 98 
                     +f+
  Pahal.I02531.1 200 IFD 202
                     886 PP
2B344.33.2e-143454093699
                     EEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  36 ltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       l +  g+sWev++ ++k s+     l kGWk+F+++n+L++gD ++F+l +++e +++v+++r+
  Pahal.I02531.1 345 TLLLQHLGKSWEVRCHIQK-SNFpsKRLLKGWKQFARDNNLQVGDLCLFELLENREYTMNVHIIRE 409
                     34555689*******5532.2333456778*********************9999999*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-21108206IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.462111204IPR003340B3 DNA binding domain
CDDcd100178.11E-21112202No hitNo description
SuperFamilySSF1019361.96E-20112211IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.1E-9114204IPR003340B3 DNA binding domain
PfamPF023625.0E-16114202IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.5E-20306409IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-18307408IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.308313410IPR003340B3 DNA binding domain
CDDcd100177.52E-15315408No hitNo description
SMARTSM010197.9E-7316410IPR003340B3 DNA binding domain
PfamPF023627.5E-13326409IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MLKPDRQSCY SSIGTWKVSR PPLWHPHLQS PFFHPQAWPL TADRRTPSGL AIWHQVSSPR  60
VIRTSGAAVP DPSVAFPHFV IFHGVVKMRK PGKRCKETDA HYYWNRSDEH DRYFFKVLAG  120
DFRERLGIPD KFVQHIRGRI AKTVKLESRT GCTFDVEVAK SLDKVVLQTG WKAFACAHDL  180
KMWDFLVFKY DGTPRLKVLI FDLSCCEKVL PCHTRDRGEG EEQIENSRSC DDFPMKSPGN  240
KRKAWKQREG CMNANTSSTS LSDSSGGSMS PEDQKSHSVP SYILPRRTFL TFELKKKLKE  300
KVRAICSKTP IYGCVMKKTS IEGKPQTMDI SGEYADVYLP FDDQTLLLQH LGKSWEVRCH  360
IQKSNFPSKR LLKGWKQFAR DNNLQVGDLC LFELLENREY TMNVHIIREK *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796557.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
SwissprotQ851V56e-95Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2S3IK340.0A0A2S3IK34_9POAL; Uncharacterized protein
STRINGPavir.Ib03970.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-13B3 family protein