PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02527.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 375aa    MW: 42292.6 Da    PI: 6.9745
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02527.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19391191398
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +  +++p +fa++++g    s  ++l+ +sg++W++ +  ++  ++++l++GWkeFv+a+g++egD ++Fk++g s+f   v +f+
  Pahal.I02527.1  39 TETMSIPGRFANNFNGH--ISEVVSLKPPSGKTWSIGV-GNNANDEVMLQSGWKEFVSAHGIEEGDYLLFKYSGVSSF--DVLMFD 119
                     4569*******888666..6779***************.4555556***************************99999..777776 PP
2B346.94.8e-15266365199
                     EEEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
              B3   1 ffkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                     f++v+ ps+v  +  g + ++ +fa+++ g +++  +++l+   g  +W v+++ ++ s++ + ++GW +Fv +ngL + D+++F+l+   ++ +
  Pahal.I02527.1 266 FVQVMHPSHVRGKksGVVAISSEFAAKYLGATRG--EIILQRVGGkGKWHVRYSCNRFSRG-LTGRGWCGFVGDNGLLDHDVCLFELITGmRRPT 357
                     6677777777654448899*********666555..79999988868******98888877.6789**********************8779999 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     ++v+v+rk
  Pahal.I02527.1 358 MNVHVLRK 365
                     99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.7E-2324123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-2326127IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.93127121IPR003340B3 DNA binding domain
CDDcd100171.49E-1928119No hitNo description
SMARTSM010198.8E-1030121IPR003340B3 DNA binding domain
PfamPF023624.3E-1739118IPR003340B3 DNA binding domain
SuperFamilySSF1019361.14E-18260364IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-20260364IPR015300DNA-binding pseudobarrel domain
CDDcd100172.85E-14264364No hitNo description
PfamPF023628.1E-13266365IPR003340B3 DNA binding domain
SMARTSM010197.7E-8266366IPR003340B3 DNA binding domain
PROSITE profilePS508639.234283366IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MQNLDKNCRV CMEWQEHYYW SHMADDQKHF FKPMVGDFTE TMSIPGRFAN NFNGHISEVV  60
SLKPPSGKTW SIGVGNNAND EVMLQSGWKE FVSAHGIEEG DYLLFKYSGV SSFDVLMFDS  120
SGCEKTWPHF AKNHGCERIE GSSGVEGARH GYHKSKGGKY RTPQLLPSDE EDEDDDGDLE  180
LAVQRNTSRS IPKPCKRKLY RDIEQVHCQV KNDEDDLELD HESDVPAKTG YYFCKNGPVS  240
GYHLTEEERE EISGVPIPAQ PTNPVFVQVM HPSHVRGKKS GVVAISSEFA AKYLGATRGE  300
IILQRVGGKG KWHVRYSCNR FSRGLTGRGW CGFVGDNGLL DHDVCLFELI TGMRRPTMNV  360
HVLRKLRGRF VLLR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797496.10.0B3 domain-containing protein Os03g0622200-like
SwissprotQ10GM31e-134Y3222_ORYSJ; B3 domain-containing protein Os03g0622200
TrEMBLA0A2S3IK370.0A0A2S3IK37_9POAL; Uncharacterized protein
STRINGPavir.Ib03973.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-27B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]