PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H02499.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 443aa MW: 46256.7 Da PI: 8.8067

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H02499.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	205	228	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg++ r+ +L+ H+ + H Pahal.H02499.1 205 FPCKLCGEVLGRPQLLELHQAMkH 228 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	207	228	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.58E-11	230	441	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.9E-8	230	440	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MAGGGSGGGG SLLRGFLSLF FLLFLHIGHA GCCFSPGSAA RAREEDEAAD AEADGKVGGG 60 GGSNKRRKIS PLIFSPAPSS SAVTNGSARA RCGHVSSVAA SLRFYLHRIF SSSAAKDGAV 120 AGREEEEAAA VVTTVSSPLA QSLPPQLSAS VVLSTPSSPC ASSSPFMSPL SVRSLSATPV 180 PSSPQKLLQA SRQSSRSFAA RGDVFPCKLC GEVLGRPQLL ELHQAMKHSL SELTHLDSSM 240 NIIRMIFLAG WKPAASGAAE APAVRRILRI HHNPRALARF EEYRDLVRAR AARRRGEGGG 300 AAVVEERCVA DGNERLRFHC STMLCSLGGG GACGSPYCCV CSTLRHGFAG KQADVDGIAT 360 YASAWAAHAS LPEDVEREFA FLQVRRAMLV CRVVAGRVGR GAADDKVAYD SMVPARGGGD 420 DVELLVFNPR AVLPCFVILY GS*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MAGGGSGGGG SLLRGFLSLF FLLFLHIGHA GCCFSPGSAA RAREEDEAAD AEADGKVGGG  60
GGSNKRRKIS PLIFSPAPSS SAVTNGSARA RCGHVSSVAA SLRFYLHRIF SSSAAKDGAV  120
AGREEEEAAA VVTTVSSPLA QSLPPQLSAS VVLSTPSSPC ASSSPFMSPL SVRSLSATPV  180
PSSPQKLLQA SRQSSRSFAA RGDVFPCKLC GEVLGRPQLL ELHQAMKHSL SELTHLDSSM  240
NIIRMIFLAG WKPAASGAAE APAVRRILRI HHNPRALARF EEYRDLVRAR AARRRGEGGG  300
AAVVEERCVA DGNERLRFHC STMLCSLGGG GACGSPYCCV CSTLRHGFAG KQADVDGIAT  360
YASAWAAHAS LPEDVEREFA FLQVRRAMLV CRVVAGRVGR GAADDKVAYD SMVPARGGGD  420
DVELLVFNPR AVLPCFVILY GS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT066435	0.0	BT066435.1 Zea mays full-length cDNA clone ZM_BFc0163N15 mRNA, complete cds.
GenBank	BT084542	0.0	BT084542.1 Zea mays full-length cDNA clone ZM_BFb0129H01 mRNA, complete cds.
GenBank	EU954611	0.0	EU954611.1 Zea mays clone 1473866 nucleic acid binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796511.1	0.0	uncharacterized protein LOC112876582
TrEMBL	A0A2S3IS37	0.0	A0A2S3IS37_9POAL; Uncharacterized protein
STRING	Pavir.J37415.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10517	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-34	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pahal.H02499.1