PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01566.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 389aa    MW: 42147.2 Da    PI: 8.3777
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01566.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.51.7e-129103871374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.............sseelaalk 82 
                     lv+lLl+cA++vs+gd+  a + L  l+  asp gd+mqR+a+yf+ ALaarl+ s++  +++ ++ +++++              s ++l++++
  Pahal.H01566.1  10 LVHLLLACADFVSKGDQPSALRHLHLLRRVASPLGDSMQRVASYFADALAARLSLSSNPSSSSSSSGAATPRGgagagvapytfppSPDTLKIYQ 104
                     68***************************************************99666666655555555555688999999999999999**** PP

            GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                     ++++++P++kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+     + +++etg+ La++A++l+vpfe
  Pahal.H01566.1 105 ILYQACPYIKFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PAAAVRETGRHLASLAASLRVPFE 195
                     *******************************************************************....88********************** PP

            GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                     f++ va+rle l++ +L+ + gEalaVn v +lhr++   v+l      +L+++++  Pk++++veqea hn++ Fl rfleal+yysa+fdsl+
  Pahal.H01566.1 196 FHAAVADRLERLRPAALQRRVGEALAVNAVNRLHRVP--GVHLGP----LLSMIRDQAPKIMTLVEQEAGHNGPYFLGRFLEALHYYSAIFDSLD 284
                     ************************************9..666666....********************************************** PP

            GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                     a++p++s  r+kvE+ ll++ei+nvvacegaer++rhe+l +Wr+ +e  GF+pvpls  a+ q + ll  ++ +dgyr+ e++g+l+lgW+dr+
  Pahal.H01566.1 285 ATFPADSAPRMKVEQCLLAPEIRNVVACEGAERVARHERLDRWRRLMEGRGFEPVPLSPAAVGQSQVLLGLYGaGDGYRLTEDKGCLLLGWQDRA 379
                     *********************************************************************************************** PP

            GRAS 367 LvsvSaWr 374
                     ++++SaWr
  Pahal.H01566.1 380 IIAASAWR 387
                     *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.1481366IPR005202Transcription factor GRAS
PfamPF035146.0E-12710387IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MQEQDSGLQL VHLLLACADF VSKGDQPSAL RHLHLLRRVA SPLGDSMQRV ASYFADALAA  60
RLSLSSNPSS SSSSSGAATP RGGAGAGVAP YTFPPSPDTL KIYQILYQAC PYIKFAHFTA  120
NQAIFEAFHG EDRVHVVDLD ILQGYQWPAF LQALAARPGG PPTLRLTGVG HPAAAVRETG  180
RHLASLAASL RVPFEFHAAV ADRLERLRPA ALQRRVGEAL AVNAVNRLHR VPGVHLGPLL  240
SMIRDQAPKI MTLVEQEAGH NGPYFLGRFL EALHYYSAIF DSLDATFPAD SAPRMKVEQC  300
LLAPEIRNVV ACEGAERVAR HERLDRWRRL MEGRGFEPVP LSPAAVGQSQ VLLGLYGAGD  360
GYRLTEDKGC LLLGWQDRAI IAASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-85238610378Protein SCARECROW
5b3h_A2e-8523869377Protein SCARECROW
5b3h_D2e-8523869377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1363770.0AC136377.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBa0028G07, complete sequence.
GenBankAC1377590.0AC137759.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0008H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828284.10.0DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2T8I9E30.0A0A2T8I9E3_9POAL; Uncharacterized protein
STRINGSb05g018070.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-99RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]