PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H00923.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 295aa MW: 30554.1 Da PI: 8.5989

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00923.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.4	2.4e-36	33	93	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl PryfCk+CrryWt+GG+lrnvPvGgg+r+++++s Pahal.H00923.1 33 KEAALNCPRCNSTNTKFCYYNNYSLRMPRYFCKTCRRYWTEGGSLRNVPVGGGSRRRNRAS 93 57889************************************************99887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.3E-31	36	91	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-23	37	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.155	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MDPTQRHEDQ SPGAPAPAPA MAAGAARRER PRKEAALNCP RCNSTNTKFC YYNNYSLRMP 60 RYFCKTCRRY WTEGGSLRNV PVGGGSRRRN RASSSAVSAA ATEAVTPSAS GTIPVELAAK 120 NPRLVHEGAR DLKLAFPHHG GRGLLQPPEF AAFPSLETSG ATVAGGNGAA RSGVGVLSAM 180 DLLRSAGCYV DAQLGMPAEH VAAGFGLGEF RFRMPAPPPV THVHGTRGVQ ESAGSSLLFP 240 FEDLKLAASA GEDATAGADQ GDDGGVVTAG HETTGFWSNS MIGNGSSNGG ASPW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	32	RRERPRK
2	26	33	RRERPRKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827716.1	0.0	dof zinc finger protein 2-like
Swissprot	B9F1L8	2e-82	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A2S3IDI9	0.0	A0A2S3IDI9_9POAL; Uncharacterized protein
STRING	Si017619m	4e-97	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	4e-28	Dof family protein

Link Out ? help Back to Top
Phytozome	Pahal.H00923.1

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]