PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H00733.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 436aa MW: 49975.7 Da PI: 6.7316

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H00733.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.1	5.7e-24	117	213	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 +Wt+ +v++Li+a+++ +++ + + +kk++W+++sk+m er +++sp+qC++k+++lnkryk+++++ +++ +++++ + +++d+ Pahal.H00733.1 117 KWTDTMVKLLITAVSYSGDDHGPDLgggrrnftimQKKGKWKAISKVMGERECHVSPQQCEDKFNDLNKRYKRLTDILGRGiACNVVANPALLDS 211 7************98888887533344667777******************************************89****999999 PP trihelix 85 le 86 ++ Pahal.H00733.1 212 MN 213 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.5E-18	115	239	No hit	No description
CDD	cd14686	0.0012	387	419	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MEGNNVPPES MMQGAPYGSL DLHGNSVQTH APNSGKQIFS NSQMPGTFTT TMNRATEPVD 60 FPGFQFKEHG KCDKHHHHHS HHSINSMSDD EEHDMTEDAT DTPSSKGKKG SPWHRMKWTD 120 TMVKLLITAV SYSGDDHGPD LGGGRRNFTI MQKKGKWKAI SKVMGERECH VSPQQCEDKF 180 NDLNKRYKRL TDILGRGIAC NVVANPALLD SMNHLSDKKK EDAKKILSSK HLFYEEMCSY 240 HNNNRANLPE DHALQHSLLL ALRCKDEHDP RRDTSGNDYE DDQSVDSDYE ENDEEQHHVH 300 ANMREPSTHK RPRHGDAALV TSSSHKGSER SGPHGIEVDI NKAFPDGTNW SLMQQDLASQ 360 TLEIQKRLLQ IEEKDLELKM QRLKWDRYRK KKDREIQRME MENEQMMIEN KRLENELRQK 420 ELELELKLKG QANNA*

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MEGNNVPPES MMQGAPYGSL DLHGNSVQTH APNSGKQIFS NSQMPGTFTT TMNRATEPVD  60
FPGFQFKEHG KCDKHHHHHS HHSINSMSDD EEHDMTEDAT DTPSSKGKKG SPWHRMKWTD  120
TMVKLLITAV SYSGDDHGPD LGGGRRNFTI MQKKGKWKAI SKVMGERECH VSPQQCEDKF  180
NDLNKRYKRL TDILGRGIAC NVVANPALLD SMNHLSDKKK EDAKKILSSK HLFYEEMCSY  240
HNNNRANLPE DHALQHSLLL ALRCKDEHDP RRDTSGNDYE DDQSVDSDYE ENDEEQHHVH  300
ANMREPSTHK RPRHGDAALV TSSSHKGSER SGPHGIEVDI NKAFPDGTNW SLMQQDLASQ  360
TLEIQKRLLQ IEEKDLELKM QRLKWDRYRK KKDREIQRME MENEQMMIEN KRLENELRQK  420
ELELELKLKG QANNA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826713.1	0.0	uncharacterized protein LOC112902031
TrEMBL	A0A2S3ICF4	0.0	A0A2S3ICF4_9POAL; Uncharacterized protein
STRING	Pavir.Ha01834.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	6e-88	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pahal.H00733.1