PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02816.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 431aa    MW: 47142.7 Da    PI: 6.9261
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02816.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3452e-14298393395
                     EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                     k lt+sdv++ gr+vlpkk ae +    +   + +  l + d e   +W++k++y  ++ks++y+l+  + eFvk + L+++D++v++  ++ ++
  Pahal.G02816.1 298 KDLTNSDVGNIGRIVLPKKDAEPNlpilED--KDGLILEMDDfELPAVWKFKYRYwpNNKSRMYILE-TTGEFVKRHSLQAKDILVIY--KNkKS 387
                     789******************999886432..34556777775555*********888888888888.9*******************..44477 PP

                     E..EEE CS
              B3  90 felvvk 95 
                     +++v +
  Pahal.G02816.1 388 GRYVAR 393
                     777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.88E-16294392IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.8E-24294405IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.7E-8296398IPR003340B3 DNA binding domain
PfamPF023622.3E-11298393IPR003340B3 DNA binding domain
CDDcd100171.45E-17300391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MANAKGSSAG AAGAGHGDLG RAISHEQYQA FVASVHRTAP GAANVHQYPA GLIPEPPMAM  60
PVHVPVPRPS YSPQIAAPPP QPFARPPEPH RAQSQPPTGR YQDYSPYGNT ASSQYTRGFA  120
DWGTHNNALM SLAHATTFGS GSSSINSNGF HQNFSSYNTH TWTTTYMPRN PYNTAYGPAT  180
MNMMLQTPSF HNNHEKDSGA GFAASSFTMP ATVVPTSPFQ LMSPKSTNYT STQIFEEPNN  240
LEDTSTVYGS GDIESDHSEE PDPTPVAEME DLKQGNGHII NAMSKTINCQ DYRIILRKDL  300
TNSDVGNIGR IVLPKKDAEP NLPILEDKDG LILEMDDFEL PAVWKFKYRY WPNNKSRMYI  360
LETTGEFVKR HSLQAKDILV IYKNKKSGRY VARAVKAEDI QVPQCECIKA GNLSEECGFA  420
VSPSGKKIII *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A2e-332863923109B3 domain-containing transcription factor LEC2
6j9c_D2e-332863923109B3 domain-containing transcription factor LEC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825471.10.0putative B3 domain-containing protein Os04g0676650
TrEMBLA0A2S3IBK40.0A0A2S3IBK4_9POAL; Uncharacterized protein
STRINGPavir.Gb00057.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-35B3 family protein