PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01853.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 588aa MW: 61429.4 Da PI: 6.576 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8e-05 | 109 | 126 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk F++++++ +H Pahal.G01853.1 109 VCKNCGKEFTSWELFLQH 126 7****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.83E-5 | 25 | 51 | No hit | No description |
PROSITE profile | PS50157 | 9.64 | 28 | 55 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.96 | 28 | 50 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0021 | 29 | 50 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 30 | 50 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 260 | 108 | 128 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.4E-9 | 277 | 302 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.51E-8 | 277 | 300 | No hit | No description |
SMART | SM00355 | 0.13 | 278 | 300 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.221 | 278 | 305 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 280 | 300 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.51E-8 | 396 | 423 | No hit | No description |
Pfam | PF13912 | 5.0E-11 | 401 | 424 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.182 | 401 | 423 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.7 | 401 | 423 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 403 | 423 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MCESSSLSLM PPSPSPPRLP GQPPEFKHFC RVCNKGFTCG SALGGHMRAH GASDVDGFGA 60 DDDSLGDEAS AARCRGSDDQ WDAVGTSSSA THAYALRANP NRLIRSCQVC KNCGKEFTSW 120 ELFLQHGKCN SEDEADEVGG GSGSLRSSSP PSDADGEEDP AVAAAWSKGK RSRRVKLMIG 180 GEDHSSMASS RQETSGEEED LANCLVMLSS SNVGQTTVVH TDKQERRAST AKEGDGSGPA 240 LQLQPISFFV PPPEPIVALP SAVAPPPQYI TPSSRNVFEC KACKKVFTSH QALGGHRASH 300 KKVKGCFAAK FESNASEPTR HSALGDSNNI TGKGAIVDEV NTGVNTEAKT SIYAATSDLD 360 TKARTSEVAA SLSMSLAPVG HNSPVAALTV AAPCKKNSKM HECSVCHRLF TSGQALGGHK 420 RCHWLTSSTA DPCNSVANMI PPLTEDIIGV VRHQLTLRQM VDAPEPALDL TIAANPAALA 480 ASVARPEAGS SSFHLEPLAP VHLQPLAVAV PSTGSHRKKT TATSSHHGAD KVAEDDEADS 540 TTAKRAKLSD LKDVVSMDGE PTGPWLQVGI GSSSAGGDDK SRESAIN* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825379.1 | 0.0 | zinc finger protein ZAT4-like | ||||
TrEMBL | A0A2S3I931 | 0.0 | A0A2S3I931_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01112.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3524 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19580.2 | 1e-15 | zinc-finger protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01853.1 |