PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01853.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 588aa    MW: 61429.4 Da    PI: 6.576
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01853.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05109126219
                     EETTTTEEESSHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                     +C++Cgk F++++++ +H
  Pahal.G01853.1 109 VCKNCGKEFTSWELFLQH 126
                     7****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.83E-52551No hitNo description
PROSITE profilePS501579.642855IPR007087Zinc finger, C2H2
SMARTSM003550.962850IPR015880Zinc finger, C2H2-like
PfamPF139120.00212950IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
SMARTSM00355260108128IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-9277302IPR007087Zinc finger, C2H2
SuperFamilySSF576675.51E-8277300No hitNo description
SMARTSM003550.13278300IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221278305IPR007087Zinc finger, C2H2
PROSITE patternPS000280280300IPR007087Zinc finger, C2H2
SuperFamilySSF576675.51E-8396423No hitNo description
PfamPF139125.0E-11401424IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182401423IPR007087Zinc finger, C2H2
SMARTSM003553.7401423IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280403423IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MCESSSLSLM PPSPSPPRLP GQPPEFKHFC RVCNKGFTCG SALGGHMRAH GASDVDGFGA  60
DDDSLGDEAS AARCRGSDDQ WDAVGTSSSA THAYALRANP NRLIRSCQVC KNCGKEFTSW  120
ELFLQHGKCN SEDEADEVGG GSGSLRSSSP PSDADGEEDP AVAAAWSKGK RSRRVKLMIG  180
GEDHSSMASS RQETSGEEED LANCLVMLSS SNVGQTTVVH TDKQERRAST AKEGDGSGPA  240
LQLQPISFFV PPPEPIVALP SAVAPPPQYI TPSSRNVFEC KACKKVFTSH QALGGHRASH  300
KKVKGCFAAK FESNASEPTR HSALGDSNNI TGKGAIVDEV NTGVNTEAKT SIYAATSDLD  360
TKARTSEVAA SLSMSLAPVG HNSPVAALTV AAPCKKNSKM HECSVCHRLF TSGQALGGHK  420
RCHWLTSSTA DPCNSVANMI PPLTEDIIGV VRHQLTLRQM VDAPEPALDL TIAANPAALA  480
ASVARPEAGS SSFHLEPLAP VHLQPLAVAV PSTGSHRKKT TATSSHHGAD KVAEDDEADS  540
TTAKRAKLSD LKDVVSMDGE PTGPWLQVGI GSSSAGGDDK SRESAIN*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825379.10.0zinc finger protein ZAT4-like
TrEMBLA0A2S3I9310.0A0A2S3I931_9POAL; Uncharacterized protein
STRINGPavir.Gb01112.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-15zinc-finger protein 2