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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Pahal.F01658.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family | bHLH | ||||||||
| Protein Properties | Length: 227aa MW: 24048.3 Da PI: 10.2466 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 45.5 | 1.3e-14 | 25 | 71 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r+h+e+Er+RR+riN +++Lr+l+P+a +++Ka+ L ++v+Y+++L
Pahal.F01658.1 25 RSHSEAERKRRQRINAHLATLRTLVPSA-----SRMDKAALLGEVVRYVREL 71
79*************************9.....7****************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00083 | 1.32E-12 | 20 | 72 | No hit | No description |
| SuperFamily | SSF47459 | 6.67E-15 | 21 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 16.571 | 22 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.2E-15 | 22 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 3.3E-12 | 25 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 6.8E-13 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 227 aa Download sequence Send to blast |
MVVTDGGVEG ERPAPAPAVR KERGRSHSEA ERKRRQRINA HLATLRTLVP SASRMDKAAL 60 LGEVVRYVRE LRGKASEAAE GVGAGVIPGE GDDVGVEEEE DDRWRPGGRR CGTGGLLGTG 120 AADGRLPPRR VRAWVCCADR PGLMADLGRA VRSVGNARPV RAEIATLDVC RDDDHVAAAA 180 TDKGGAVALS TLRAALRAVL LNREDHLAAA EGYKRPRFSA QIAKVK* |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 30 | 35 | ERKRRQ |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025822447.1 | 1e-143 | transcription factor AIG1-like | ||||
| TrEMBL | A0A2T8IHC4 | 1e-141 | A0A2T8IHC4_9POAL; Uncharacterized protein | ||||
| STRING | Pavir.J25149.1.p | 1e-104 | (Panicum virgatum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP4114 | 35 | 69 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38070.1 | 1e-12 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Pahal.F01658.1 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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