PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F00032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 943aa MW: 103996 Da PI: 9.483 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.9e-07 | 210 | 229 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr+f + G C++G++C+F H Pahal.F00032.1 210 PCRDFVA-GRCRRGSNCRFLH 229 7******.************* PP | |||||||
2 | zf-CCCH | 27.5 | 5.5e-09 | 292 | 314 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 te C +fa+ G C +G++C+FaHg Pahal.F00032.1 292 TEQCYNFAK-GRCARGASCRFAHG 314 899******.*************9 PP | |||||||
3 | zf-CCCH | 23.4 | 1.1e-07 | 353 | 372 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G C++G++C++ H Pahal.F00032.1 353 PCKFFAE-GRCRRGENCPYLH 372 8******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0014 | 206 | 231 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-5 | 210 | 231 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.737 | 210 | 232 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-4 | 210 | 229 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.497 | 289 | 316 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.002 | 289 | 315 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-6 | 292 | 315 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-6 | 292 | 314 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.896 | 348 | 375 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-5 | 348 | 374 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-7 | 349 | 373 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 352 | 374 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.9E-5 | 352 | 372 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 943 aa Download sequence Send to blast |
MTGDSRRQRS KWDAKEASHD IVEISEDESL PDKTGVHRKG GDVHPKPDTS MHHCGAGHEK 60 EQADGFNKDT KELQPKAPSE RSQPLRAADE RDNNEWSKAA GNQGMNRYAD DRRRGDGWGT 120 ARSHGYSSRV PSDTDAWRPR SRSPSPRGVW NRSRRNRSRS RSRSRSRNRS RSRSRSIGRG 180 RGRSRSPYFA DRGSDWRVER GRTSGGPALP CRDFVAGRCR RGSNCRFLHE DGGHRPFEDH 240 YPADPRERFG YQNKEFMDSR EPNDYLRSRQ SRDHYDDGPW ERSEPRRDYR STEQCYNFAK 300 GRCARGASCR FAHGDSASHG GWRDDARESA HDRGGPDSSY GNRTENRRVN KNPCKFFAEG 360 RCRRGENCPY LHEEAPQSQI GVSAPDAPLN YSDGRPARGN YSNWSEQNNA MHETSQILSR 420 DDRDNPISQS IGRNDSRYEY ESRHSKDAGK SQFQIIPQED FGSQVENKHE VAVSQQPQLL 480 APVQTTADNM NNENVPGMGG QNAPATVGDL SMQSGMHSAN NLAEQSLGQI LQRHDAIPHI 540 PGPSNLPVTT QLQNVTSSFP SNSHVKQNNF PVHQNRQEQF VVPQAVANNP TPGMQGQPVA 600 PHMGHGQHVY GLEPQALPNP SAAHNGHNFS IASQVPQNLP TTVLLPTTVL AGQSQGTVDI 660 PRLGQDSGSQ STRNMQNFQS VPNTQNQSLQ GLPLVPTSSS TDMAGPTVSH NAAKSEEVSR 720 VTASLAQYFG NTAFGAGTGL QSSQPNVNSS LMANSSAVPP GVQPNQWPWA QHQTGIVQPG 780 LSVPSEQQQQ HAPQTFQMPI AVGSSNGNSM LLPHTGAPSG PAAAASVVNE TVPPEIKKGE 840 NKDSDAEGHE DGDNKKSKDS KPLKMFKVAL ADFVKEALKP TWKEGQMSRE VHKTIVKKVV 900 DKVTSTVENT PPTKEKIEIY MSYSKEKLNK LVQAYVGKYA KA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 164 | 174 | RSRNRSRSRSR |
2 | 166 | 174 | RNRSRSRSR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820462.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
Refseq | XP_025820463.1 | 0.0 | zinc finger CCCH domain-containing protein 55-like | ||||
Swissprot | Q6YYC0 | 0.0 | C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55 | ||||
TrEMBL | A0A2S3HZY1 | 0.0 | A0A2S3HZY1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa02279.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7766 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 1e-08 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F00032.1 |
Publications ? help Back to Top | |||
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