PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E04568.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 357aa MW: 37218.4 Da PI: 6.8321 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.9 | 9.1e-33 | 152 | 209 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+ Pahal.E04568.1 152 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 209 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-33 | 136 | 210 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-28 | 143 | 209 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.746 | 146 | 211 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.6E-39 | 151 | 210 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-26 | 152 | 209 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MAGAGEAGVV GGSEWPFSAD AYADSSAIFA ELGCWAAGLD GAGGGELLPA LDPTPEDIRY 60 TLPPPSGSVS VDGGASSSST DDGAAQEDAA DGKPAAATEA ASKPAAPAPG KTMMTAATGN 120 NSNNNTKSGQ NKKRARQPRF AFMTKSDVDH LEDGYRWRKY GQKAVKNSPF PRSYYRCTNS 180 KCTVKKRVER SSDDPSVVIT TYEGQHCHHT VTFPRAAHLH AAAALAGHMA FSAAHHHHHL 240 YSATNDHLPP LQHPDPTTAA AQQQSALITT SGDSSLACRP AMLLPPSLLR PLLHSNQQEL 300 LAATYPLSSA MMTMPVDSSS LVVSTQSPSP LTAVTSSPAV DKGLLDDMVP PAMRHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-25 | 141 | 208 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-25 | 141 | 208 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240958 | 8e-75 | AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence. | |||
GenBank | AY341858 | 8e-75 | AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803236.1 | 0.0 | probable WRKY transcription factor 48 | ||||
TrEMBL | A0A2S3GVD8 | 0.0 | A0A2S3GVD8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb00073.1.p | 1e-164 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 7e-53 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E04568.1 |