PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04568.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 357aa    MW: 37218.4 Da    PI: 6.8321
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04568.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.99.1e-33152209259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers++dp+vv++tYeg+H h+
  Pahal.E04568.1 152 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSDDPSVVITTYEGQHCHH 209
                     8******************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-33136210IPR003657WRKY domain
SuperFamilySSF1182903.92E-28143209IPR003657WRKY domain
PROSITE profilePS5081129.746146211IPR003657WRKY domain
SMARTSM007748.6E-39151210IPR003657WRKY domain
PfamPF031065.3E-26152209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAGAGEAGVV GGSEWPFSAD AYADSSAIFA ELGCWAAGLD GAGGGELLPA LDPTPEDIRY  60
TLPPPSGSVS VDGGASSSST DDGAAQEDAA DGKPAAATEA ASKPAAPAPG KTMMTAATGN  120
NSNNNTKSGQ NKKRARQPRF AFMTKSDVDH LEDGYRWRKY GQKAVKNSPF PRSYYRCTNS  180
KCTVKKRVER SSDDPSVVIT TYEGQHCHHT VTFPRAAHLH AAAALAGHMA FSAAHHHHHL  240
YSATNDHLPP LQHPDPTTAA AQQQSALITT SGDSSLACRP AMLLPPSLLR PLLHSNQQEL  300
LAATYPLSSA MMTMPVDSSS LVVSTQSPSP LTAVTSSPAV DKGLLDDMVP PAMRHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25141208774Probable WRKY transcription factor 4
2lex_A3e-25141208774Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2409588e-75AK240958.1 Oryza sativa Japonica Group cDNA, clone: J065045F23, full insert sequence.
GenBankAY3418588e-75AY341858.1 Oryza sativa (japonica cultivar-group) WRKY18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803236.10.0probable WRKY transcription factor 48
TrEMBLA0A2S3GVD80.0A0A2S3GVD8_9POAL; Uncharacterized protein
STRINGPavir.Bb00073.1.p1e-164(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.27e-53WRKY DNA-binding protein 57