PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02537.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 496aa    MW: 53166.5 Da    PI: 4.9289
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02537.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.75.6e-20101431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkev 92 
                     lp+++ F P+de  v +yL +++ g + +++  i e d +++ Pw+L  + +++++e +f ++ + +  +g+r++r  +  g W+  +t  + + 
  Pahal.D02537.1  10 LPACLVFAPEDEVAVEFYLLPRLLGWRPQIDGLILEDDPLSAPPWELL-ERNGRKEEAFFLAEGQARCGKGTRQKRtCAGGGWWEgqKTCAEGNK 103
                     578899************************999**************7.445677899999999************5455666762223333322 PP

             NAM  93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              ++e+ + kk L f+ g   +  +t Wvmhey++
  Pahal.D02537.1 104 --LrvpgggDQEAAWRKKALNFHGGGGGEKGSTGWVMHEYAV 143
                     ..134677777889*********99888888*********86 PP
2NAM43.78.7e-1419630029128
             NAM  29 eleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dkevlsk.....kgelvglkktLvfykgrapk 115
                     +l+  i + d +++ Pw+L +  ++ +++ +fF+  + k+ +g+r++r  +  g+W+   +  d e l+       +e+ + kk L f +g ++ 
  Pahal.D02537.1 196 PLDGLILDDDPLSAPPWELLE-RNGCKDDAFFFALGQAKSGKGSRQKRtCAGGGFWNGERTcvDGEKLRIpgpggADEVAWRKKALSFQEGGEKG 289
                     44456888999********73.34556799******************77789***9543322333333357777677799*******9887766 PP

             NAM 116 gektdWvmheyrl 128
                       +t Wvmhey++
  Pahal.D02537.1 290 --STGWVMHEYAI 300
                     ..8********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-265161IPR003441NAC domain
PROSITE profilePS5100525.32210162IPR003441NAC domain
PfamPF023652.8E-1114142IPR003441NAC domain
PROSITE profilePS5100518.138167319IPR003441NAC domain
SuperFamilySSF1019418.37E-23173319IPR003441NAC domain
PfamPF023657.7E-9181299IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MESALRVADL PACLVFAPED EVAVEFYLLP RLLGWRPQID GLILEDDPLS APPWELLERN  60
GRKEEAFFLA EGQARCGKGT RQKRTCAGGG WWEGQKTCAE GNKLRVPGGG DQEAAWRKKA  120
LNFHGGGGGE KGSTGWVMHE YAVTAPEDLA RSPLRLYHIR RSSYGRKQSG AMEVPRALGL  180
PPGFLFAPED GDVALPLDGL ILDDDPLSAP PWELLERNGC KDDAFFFALG QAKSGKGSRQ  240
KRTCAGGGFW NGERTCVDGE KLRIPGPGGA DEVAWRKKAL SFQEGGEKGS TGWVMHEYAI  300
TAPDHLAESQ LRLYRIRFSG HGKKRKRGEA DSFADEAAPT AARRRVADDA PLDMSTSQPS  360
YSSSMVMVDH ADGNCPTGAD QLAAAPVSIS ANQDLNPGIT VDTSLDLGFL DNFDIDEFMR  420
SLGDLPSTDP CVLPAVTDTG AYLHADAVGS SFFGQMGSPY NGVGTGQVAS SSLRRGCMEP  480
ADAFFTGPNQ SYAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321327GKKRKRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813463.10.0uncharacterized protein LOC112890817
TrEMBLA0A2T7E0R60.0A0A2T7E0R6_9POAL; Uncharacterized protein
STRINGPavir.Bb00848.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.11e-08NAC domain containing protein 76