PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D01376.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 389aa MW: 41304.9 Da PI: 7.7182 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.1 | 3.3e-13 | 113 | 162 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h +Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq Pahal.D01376.1 113 TSHITVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 162 789************************9...9********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.234 | 110 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-10 | 113 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.15E-16 | 113 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-13 | 113 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.21E-13 | 113 | 166 | No hit | No description |
SMART | SM00353 | 1.6E-11 | 116 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 9.224 | 322 | 388 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MEEALCDQLF SDVDGDLMMH HPSDADDLLG ILEAWEDCVT GGGSTPRGAK VPQATDAAVA 60 TSNPAPASGN VRRLGDREDA TMRAAPKRRR CSPAVSSSDA AATSDDGAAN NNTSHITVER 120 NRRKQMNEHL AVLRSLMPCF YVKRGDQASI IGGVVDYIKE LQQVLQSLEA KKQRKAYTDQ 180 VLSPRPPPAC CSPRPPLSPR PPLPPLKSTP PISPRPSVPI SPRTPPGPGS PYKVRRQPPL 240 PLPLSPPGSA YTSPARTPTR EPSPASSSYL PSLDKIAAEL CAYAAGTNKQ QQRQALLPAA 300 TSGGAVVLLP DVRVEFSGAN LVVKTVSHRE PGQAVKVIAA LEGRSLEILD AKISTVDDTA 360 VNSFTIKIGI ECELSAEELV QEIQQAFS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP093390 | 1e-98 | FP093390.1 Phyllostachys edulis cDNA clone: bphyem213c13, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813040.1 | 0.0 | transcription factor SPEECHLESS-like | ||||
TrEMBL | A0A2S3HIY9 | 0.0 | A0A2S3HIY9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db01402.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3484 | 35 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53210.1 | 1e-35 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D01376.1 |