PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04517.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 489aa    MW: 55241.4 Da    PI: 9.5672
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04517.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.44.8e-1726114198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkvl     +k+g +++p+k ++++   ++ s +++le ++g++++v++     +++ vl++GW++F+ a +Lk gD +vF+ +  ++ +++v+
  Pahal.C04517.1  26 FFKVL--MGDFKNG-VTIPRKSVANIR--EHLSEEVKLEAPDGKTYTVQV--AMEQNELVLRSGWSDFACAYELKLGDLLVFRNS--EKSHFKVR 111
                     77777..5566666.********8886..458889***************..999999*************************44..45545888 PP

                     EE- CS
              B3  96 vfr 98 
                     +f 
  Pahal.C04517.1 112 IFG 114
                     886 PP
2B343.65.4e-14239321793
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     +  + +sg+l ++k++a +h  +k  s  ++l +++g + W ++l  + + ++ y  ++GW +F ++n+L+egD+++F+ ++++++  v
  Pahal.C04517.1 239 HRRSVASGILAISKNYAMKHLANK--SGIIQLSQLDGsKIWAINL--DITTKGhYAVSTGWMDFIRDNKLREGDICIFQPSKSKNG--V 321
                     556677899***********6664..448*****999899*****..55555549999*********************8876444..3 PP
3B346.94.9e-15388483498
                     E-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     +  +s+ +++++++l  + ++e+       g       t++l + ++ ++We ++ ++++  r  l++GW++F+k+n+Lk gD+++F+l++++e 
  Pahal.C04517.1 388 IVQTSNITERSCIMLKSRSLSEYakrylrgG-----YDTIRLLHpKKTNTWEAEIAITNN--RPRLGRGWRQFAKDNELKLGDICLFQLMENKEL 475
                     5567778888889999999999988656533.....4489*9995566*******55555..566*************************99999 PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                      ++v+++ 
  Pahal.C04517.1 476 AMTVHIIP 483
                     99999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.06E-2022118IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-2122118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.98423116IPR003340B3 DNA binding domain
CDDcd100175.25E-2024113No hitNo description
SMARTSM010192.0E-1326116IPR003340B3 DNA binding domain
PfamPF023624.6E-1426113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-15226323IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.07E-16228324IPR015300DNA-binding pseudobarrel domain
CDDcd100174.29E-12232326No hitNo description
PROSITE profilePS5086311.885233331IPR003340B3 DNA binding domain
SMARTSM010197.9E-7235329IPR003340B3 DNA binding domain
PfamPF023621.1E-10238324IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-15378481IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-15380484IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-12383483No hitNo description
SMARTSM010192.0E-6385485IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661385485IPR003340B3 DNA binding domain
PfamPF023622.1E-12388483IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MNKSRTVCKE CIAYHYWHHM DDRKRFFKVL MGDFKNGVTI PRKSVANIRE HLSEEVKLEA  60
PDGKTYTVQV AMEQNELVLR SGWSDFACAY ELKLGDLLVF RNSEKSHFKV RIFGPSGCEK  120
ELSCVLMDGA PCVQERKVSH DNHTQSSTGK RMAIGNPSGS RKTLKTNPTD SPSQKNEEHV  180
PSSEGIQKPM NSGGSVQKPT KSCIVLPTGC NMTSEQRAQV ITLEQKTQPE LPFYITAMHR  240
RSVASGILAI SKNYAMKHLA NKSGIIQLSQ LDGSKIWAIN LDITTKGHYA VSTGWMDFIR  300
DNKLREGDIC IFQPSKSKNG VTLIFHPLEE SHCLQPPGYV PSSRSPAHGV TEPGYIVPRK  360
TILTDQQKHQ VEEKVRAIRS PYHLFVLIVQ TSNITERSCI MLKSRSLSEY AKRYLRGGYD  420
TIRLLHPKKT NTWEAEIAIT NNRPRLGRGW RQFAKDNELK LGDICLFQLM ENKELAMTVH  480
IIPERECS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808338.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
RefseqXP_025808339.10.0B3 domain-containing protein LOC_Os12g40080-like isoform X1
SwissprotQ2QMT61e-157Y1208_ORYSJ; B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A2S3HFG20.0A0A2S3HFG2_9POAL; Uncharacterized protein
STRINGPavir.Cb00423.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-24B3 family protein