PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04515.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 356aa MW: 40720.9 Da PI: 8.2286 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.1 | 3.2e-18 | 28 | 115 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk + +++g +++p kfa++++g + + l+++sg++W++++ +k+ ++ +l + W++Fvka++L+e+D +vF+ +g+s+f v Pahal.C04515.1 28 FFKLM--TGDFAKG-ISIPEKFAKNFDGT--G--SIDLKTPSGETWNIRV--DKHVDELFLVSRWEDFVKAHRLRENDLLVFTCSGDSSF--DVL 111 55555..4445555.9*******888766..5..59**************..*******************************9999999..888 PP EE-S CS B3 96 vfrk 99 +f++ Pahal.C04515.1 112 IFEA 115 8865 PP | |||||||
2 | B3 | 42.8 | 9.6e-14 | 248 | 346 | 1 | 99 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 f++vl s+v ++ + l++p +f+++h +k ++tl + +W vk++y ++ +++ + Fv++n+L+egD++ F+l++ ++ ++ Pahal.C04515.1 248 FVTVLQMSHVRRKsNFLIFPSRFVADHLDSKL--HEITLVRpNRKDKWCVKYCYGRGAQGIR-NYTFSMFVQENRLREGDICAFELMKGaRRVTM 339 5566666666655478899********55543..378888835669*******988888843.33577*****************9977799999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++rk Pahal.C04515.1 340 TVHAIRK 346 9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.844 | 25 | 116 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.46E-19 | 27 | 120 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.43E-17 | 27 | 113 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.0E-19 | 27 | 118 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.1E-15 | 28 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-12 | 28 | 116 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-17 | 240 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.61E-15 | 243 | 346 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.77E-13 | 246 | 345 | No hit | No description |
Pfam | PF02362 | 1.2E-12 | 248 | 346 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.5E-10 | 248 | 347 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.812 | 249 | 345 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MVHKGCESCR EWQEHYYWEH MDVTKIRFFK LMTGDFAKGI SIPEKFAKNF DGTGSIDLKT 60 PSGETWNIRV DKHVDELFLV SRWEDFVKAH RLRENDLLVF TCSGDSSFDV LIFEASGCEK 120 VSSLFGSSTG PDMRKRLDDM ADRGKPGKQA EHYALTDSED TTTRSHLAGF PHHASTSKKS 180 GSRNPRKMPE SPNSSSDHVK PDAIGEEDSD EEHANSNYYY SRVANRLSDE EKEKIISLAS 240 IRPDNPAFVT VLQMSHVRRK SNFLIFPSRF VADHLDSKLH EITLVRPNRK DKWCVKYCYG 300 RGAQGIRNYT FSMFVQENRL REGDICAFEL MKGARRVTMT VHAIRKVDCR FVRVG* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808342.1 | 0.0 | B3 domain-containing protein Os12g0592300-like | ||||
Swissprot | Q2QMT2 | 1e-132 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A2S3HF08 | 0.0 | A0A2S3HF08_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca02538.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-30 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04515.1 |