PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04513.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 355aa    MW: 40961.7 Da    PI: 8.6051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04513.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.31.6e-19401171598
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++p kf+++++g+ ++   l l+ +sg++W v +  +k++++ +lt+GWk+Fvka++Lke+D ++F+  g+s+f   +++f+
  Pahal.C04513.1  40 GISIPAKFVKNFNGQITK--GLDLKVPSGETWHVCV--DKRDDELLLTSGWKDFVKAHELKENDLLIFTCRGNSSF--EISIFE 117
                     389******999888555..5***************..*******************************9998999..777776 PP
2B341.81.9e-13249345399
                     EE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
              B3   3 kvltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                      vl +s+  ++ + l++p +fa++h ++  ++ +++l   ++  +W+v++ y+ + ++   l     +Fv+ n+L+egD +vF+l++  ++ +++
  Pahal.C04513.1 249 AVLQKSHCQRRsNFLIVPSRFAADHLQE--RTEEIILCRpSRKDKWSVRYYYKTYTRGfQSL--PFFKFVHGNKLREGDACVFELMKGaKRVTMR 339
                     5666666665547789********9433..33467776626669******886666663444..4999****************99877****** PP

                     EEEE-S CS
              B3  94 vkvfrk 99 
                     v+v+rk
  Pahal.C04513.1 340 VHVIRK 345
                     ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-2322121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.74726119IPR003340B3 DNA binding domain
CDDcd100176.86E-2028116No hitNo description
Gene3DG3DSA:2.40.330.102.6E-2228121IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-1329119IPR003340B3 DNA binding domain
PfamPF023621.2E-1639118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-19239345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-17240344IPR015300DNA-binding pseudobarrel domain
CDDcd100173.81E-14245344No hitNo description
PfamPF023627.4E-12247345IPR003340B3 DNA binding domain
SMARTSM010192.2E-10247346IPR003340B3 DNA binding domain
PROSITE profilePS5086310.461248346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MMVEKGCESC REWREHYYRE HMDVTKIRFF KFMTGDFVRG ISIPAKFVKN FNGQITKGLD  60
LKVPSGETWH VCVDKRDDEL LLTSGWKDFV KAHELKENDL LIFTCRGNSS FEISIFEASS  120
CEKLSSLFAN RIGPNLHKHL NDTAGQHAEP YTLTDSEEAS MAPQLVGSTH MASTSKKYNC  180
KTKPRKEPQS LNSSSYHVKH EGIEEEESDD MYADSKFYYS RMANQFTVEE KENILSLASI  240
QPENPAFVAV LQKSHCQRRS NFLIVPSRFA ADHLQERTEE IILCRPSRKD KWSVRYYYKT  300
YTRGFQSLPF FKFVHGNKLR EGDACVFELM KGAKRVTMRV HVIRKVGDRF VLVG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808343.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-138Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2S3HF200.0A0A2S3HF20_9POAL; Uncharacterized protein
STRINGSi024966m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-24B3 family protein