PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C04511.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 365aa    MW: 41791 Da    PI: 9.8554
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C04511.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.6e-1739127299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     fk +     ++++ +++p+kf+++ +g+ ++   l l+ +sg++W +++   k+ ++ ++ +GW +F+kan+L+e+D ++F+++g+ +f   v++
  Pahal.C04511.1  39 FKLM--TGDFAQS-ISIPRKFVSNLNGQITK--GLNLKAPSGETWLIEV--AKNADELLFMSGWDNFAKANELQENDLLIFTRSGKYSF--DVQI 124
                     5555..3333443.8*******887877555..5***************..*******************************8877666..9999 PP

                     E-S CS
              B3  97 frk 99 
                     f++
  Pahal.C04511.1 125 FDA 127
                     987 PP
2B336.67.9e-122673551099
                     HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                      +k+++l++   fa++h +g   ++  l l+ ++  +W v++ +  + +++   + W +F ++n+L+   +++F+l++  + +++vv+v+rk
  Pahal.C04511.1 267 GHKNNLLTIHHGFAADHlEGR--SHDILLLRPKRKDKWYVRYYHASHTRGFNC-RRWVKFIRDNRLRKDHICIFELMKGaRMTTMVVHVLRK 355
                     568899***********6444..3334555668889******55666666655.59*******************997779999*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-2133130IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.90235128IPR003340B3 DNA binding domain
CDDcd100171.37E-1637126No hitNo description
Gene3DG3DSA:2.40.330.105.3E-2137130IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-1038128IPR003340B3 DNA binding domain
PfamPF023621.8E-1439127IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15249354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-15250354IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-10255354No hitNo description
SMARTSM010197.8E-6257356IPR003340B3 DNA binding domain
PROSITE profilePS508639.516258356IPR003340B3 DNA binding domain
PfamPF023621.4E-9268355IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MPSRECRMSK MIHQWCESCR KWQEHCYLKH MGASKVRFFK LMTGDFAQSI SIPRKFVSNL  60
NGQITKGLNL KAPSGETWLI EVAKNADELL FMSGWDNFAK ANELQENDLL IFTRSGKYSF  120
DVQIFDASGC EKVPCFFTSK KGPCMHKHLD GIVDQHAEHC ILSDSDDLRM PLRLIGSPHK  180
ASTSKKMSGK TKPRKEPESP SSGSYHIKPE PISNEEQSGD RLFDSNYYYS RSASNLTGDE  240
RDQIFGLASI QPGNPAFVAV LHKTHIGHKN NLLTIHHGFA ADHLEGRSHD ILLLRPKRKD  300
KWYVRYYHAS HTRGFNCRRW VKFIRDNRLR KDHICIFELM KGARMTTMVV HVLRKVDGRL  360
VLVA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808341.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-150Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2S3HFH20.0A0A2S3HFH2_9POAL; Uncharacterized protein
STRINGPavir.Ca02695.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-27B3 family protein