PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C04191.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 407aa MW: 43302.4 Da PI: 7.0217 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 85.1 | 6.4e-27 | 218 | 277 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++ gs++prsYYrCt++ gC++kkkv+r ++dp + e+tY g+H++ Pahal.C04191.1 218 DDGYTWRKYGQKDILGSRYPRSYYRCTHKnyyGCEAKKKVQRLDHDPFMYEVTYCGNHTC 277 8***************************99999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.4E-27 | 210 | 277 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-24 | 215 | 277 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-37 | 217 | 279 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.918 | 218 | 275 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-25 | 218 | 277 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MQHVLAAHPG PPLALLGGSL DHRDSITREP VVVGRTMDDA VLQIEDAFGL ARELMAELQA 60 TPQNDPGYLA GRCQRIAQAY LAASRMLGPH PHGADDLSPP AALQRHHPFG GGDGSGSSHG 120 HLQQLELLRP FLGGGEPSSA PFQQHLGRLL EPSPFNTTTS PDMFGAGTSG GPVRRQASSS 180 RSSPPVQPRQ HRRRRESGER MTMMVPVQRT GNTDLPPDDG YTWRKYGQKD ILGSRYPRSY 240 YRCTHKNYYG CEAKKKVQRL DHDPFMYEVT YCGNHTCLTS TTPILTLPAH TTTAASTAAS 300 MLTNSPTGSA AILAGQDLVM APAAEHPTPP ALSTAIQLGI SWMPSALVGP SAGEGSSSAQ 360 VNVPAASGRD TEFPVMDLAD AMFNSGSSGG SSMDGIFPAH HEQRDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-20 | 218 | 277 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287817 | 2e-85 | AK287817.1 Oryza sativa Japonica Group cDNA, clone: J065181J09, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809471.1 | 0.0 | uncharacterized protein LOC112887503 | ||||
TrEMBL | A0A2S3HD54 | 0.0 | A0A2S3HD54_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca01708.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9796 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 1e-37 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C04191.1 |