PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.C03979.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 144aa MW: 15828.7 Da PI: 7.4426 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 144.4 | 2.7e-45 | 18 | 109 | 4 | 95 |
NF-YB 4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +d++lPianv+rimk +lP +akisk aket+qec++efi+fvt+eas++c+re+rktingdd+++a+ +lG+++y+++++ yl++yre e+ Pahal.C03979.1 18 HDNLLPIANVGRIMKDALPPQAKISKRAKETIQECATEFIGFVTGEASERCRRERRKTINGDDICHAMRSLGLDHYADAMRRYLQRYRESEE 109 699**************************************************************************************885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.4E-42 | 15 | 109 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.55E-33 | 19 | 111 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-24 | 22 | 85 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.2E-14 | 49 | 67 | No hit | No description |
PRINTS | PR00615 | 1.2E-14 | 68 | 86 | No hit | No description |
PRINTS | PR00615 | 1.2E-14 | 87 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 144 aa Download sequence Send to blast |
MSMASDSSSR EDNSRAGHDN LLPIANVGRI MKDALPPQAK ISKRAKETIQ ECATEFIGFV 60 TGEASERCRR ERRKTINGDD ICHAMRSLGL DHYADAMRRY LQRYRESEEL AAALNSGGGG 120 GGIQIDVRAE LSIFRGDEQQ GRN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 2e-38 | 18 | 106 | 4 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 2e-38 | 18 | 106 | 4 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JN974244 | 2e-98 | JN974244.1 Zea mays HAP3-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025814482.1 | 1e-100 | transcriptional activator hap3-like | ||||
Swissprot | O04027 | 3e-43 | NFYB4_ARATH; Nuclear transcription factor Y subunit B-4 | ||||
TrEMBL | A0A2T8IIP1 | 2e-98 | A0A2T8IIP1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea03969.1.p | 1e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2917 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09030.1 | 1e-44 | nuclear factor Y, subunit B4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.C03979.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|