PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C02473.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 641aa MW: 69582.2 Da PI: 7.3795 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.1e-07 | 125 | 148 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 + t++C f+ + G+Ck G++C F H Pahal.C02473.1 125 WATKICTFYTQ-GWCKKGNSCAFLH 148 5699***9999.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-7 | 121 | 151 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-7 | 124 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0015 | 124 | 150 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.197 | 124 | 151 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-5 | 126 | 148 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010220 | Biological Process | positive regulation of vernalization response | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MASAGGGVGA TDEIPEVERE VVERAPEEPG RVGSKRVRDS PSALGSHGFY GVTTAEKKPM 60 LQPHNVDKSL SKAGNSNLLH MNSDGASKVG GRYLHGTDGL GTPDSSALRL NILSPGENLE 120 NETKWATKIC TFYTQGWCKK GNSCAFLHER EGLGFAKAGL LAPPGFENHR GSEEGSQGQH 180 QSNLKVPQFK DAEGSSKHEL YRSLIHVYGE DNERLAHIAD KRNSTTPGIS QGLHGTGSIV 240 QGRVVHEKNH KPFMRHHTGL SPETYLDGRG ILLDGGNFQS GMDRRNGLSN AHVARTFLDA 300 NTLNSGHQFQ SCGLSISSDP FQLSEKLSAY GATTENLPNT HQKEHSSHAS YSSRSLTGFR 360 NPGYAIPEIS LGSPTLQTTS QLGVQFHHLF TTGTEKVNLH TYIDADKGCG TSRPALLSSS 420 SSEPYIMSAG PLSPIKDEVW ETSVPFVPSF SFPDSTTPPG SQYDPFVDYI EPPKVGDTDN 480 LKSSYVSFST SSQHTNQYVI TDESLNRDDE LTRNIHAKGA NGPAYLISSD RGHSSSLDDN 540 NRVKSCERKI GAANNDEKAR DFRFHLAEHI KELIKPIWKA GNLSKDAHKL VVKKSVGKIV 600 DSIGPNQIPT TEELIAKYIT TSGSKIEKLV KAYVDKHRTT * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806080.1 | 0.0 | zinc finger CCCH domain-containing protein 36-like | ||||
Swissprot | Q75K81 | 1e-170 | C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | A0A2S3HAT3 | 0.0 | A0A2S3HAT3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca01361.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11010 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 7e-16 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C02473.1 |
Publications ? help Back to Top | |||
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