PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C02473.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 641aa    MW: 69582.2 Da    PI: 7.3795
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C02473.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07125148125
                     --S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                     + t++C f+ + G+Ck G++C F H
  Pahal.C02473.1 125 WATKICTFYTQ-GWCKKGNSCAFLH 148
                     5699***9999.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-7121151IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-7124149IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015124150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197124151IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-5126148IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MASAGGGVGA TDEIPEVERE VVERAPEEPG RVGSKRVRDS PSALGSHGFY GVTTAEKKPM  60
LQPHNVDKSL SKAGNSNLLH MNSDGASKVG GRYLHGTDGL GTPDSSALRL NILSPGENLE  120
NETKWATKIC TFYTQGWCKK GNSCAFLHER EGLGFAKAGL LAPPGFENHR GSEEGSQGQH  180
QSNLKVPQFK DAEGSSKHEL YRSLIHVYGE DNERLAHIAD KRNSTTPGIS QGLHGTGSIV  240
QGRVVHEKNH KPFMRHHTGL SPETYLDGRG ILLDGGNFQS GMDRRNGLSN AHVARTFLDA  300
NTLNSGHQFQ SCGLSISSDP FQLSEKLSAY GATTENLPNT HQKEHSSHAS YSSRSLTGFR  360
NPGYAIPEIS LGSPTLQTTS QLGVQFHHLF TTGTEKVNLH TYIDADKGCG TSRPALLSSS  420
SSEPYIMSAG PLSPIKDEVW ETSVPFVPSF SFPDSTTPPG SQYDPFVDYI EPPKVGDTDN  480
LKSSYVSFST SSQHTNQYVI TDESLNRDDE LTRNIHAKGA NGPAYLISSD RGHSSSLDDN  540
NRVKSCERKI GAANNDEKAR DFRFHLAEHI KELIKPIWKA GNLSKDAHKL VVKKSVGKIV  600
DSIGPNQIPT TEELIAKYIT TSGSKIEKLV KAYVDKHRTT *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806080.10.0zinc finger CCCH domain-containing protein 36-like
SwissprotQ75K811e-170C3H36_ORYSJ; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A2S3HAT30.0A0A2S3HAT3_9POAL; Uncharacterized protein
STRINGPavir.Ca01361.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110102123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.17e-16C3H family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]