PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01885.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 288aa    MW: 30900.3 Da    PI: 6.0352
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01885.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.29.1e-25112173159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg +WrKYGqK++ g+ +pr+Y+rCt++   gC+++k+v+r++ dp + +++Y+g H + 
  Pahal.C01885.1 112 LDDGLSWRKYGQKDILGAMYPRAYFRCTHRnsqGCSATKHVQRADGDPLLYDVVYHGAHACA 173
                     58***************************98889*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-2699174IPR003657WRKY domain
SuperFamilySSF1182905.23E-24106173IPR003657WRKY domain
PROSITE profilePS5081121.551107170IPR003657WRKY domain
SMARTSM007743.1E-37112174IPR003657WRKY domain
PfamPF031064.8E-24113172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDGCGGEKRA LASELAQVQA MVRELEARMD QDLPAAAREL CGELASSVDR SIRIARACGW  60
YSPGSRDGSP RSDGAQHPGG GGGGNAQSKR RKGTPCVRTQ VRVAAVQDMA PLDDGLSWRK  120
YGQKDILGAM YPRAYFRCTH RNSQGCSATK HVQRADGDPL LYDVVYHGAH ACAQAAHPGA  180
EHLRRQLQPE GHADAEQSSP LAPEAECLQA GLEPVAPYSF APAPGAGADF VGYFPLLSPT  240
GLEWQLRSSY AAGGLGVGMD YEPHFEEFYK NATDPFQWEY SDLYAAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-19112172868OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586190.0KU058619.1 UNVERIFIED: Panicum miliaceum WRKY1-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806380.10.0probable WRKY transcription factor 30
TrEMBLA0A2S3H9K00.0A0A2S3H9K0_9POAL; Uncharacterized protein
STRINGPavir.J01329.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-30WRKY family protein