PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01192.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 339aa    MW: 37947.2 Da    PI: 6.5877
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01192.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.45.3e-2060128169
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                     +W++ e+ a +++r e+++++ ++k++k+lWe vs++++ +gf r+p qCk+kw+nl +r+k +++ + 
  Pahal.C01192.1  60 QWSHAETAAFLAVRAELDHSFLTTKRNKALWEFVSARLQGQGFARTPDQCKSKWKNLVTRFKGTEAAAA 128
                     7*************************************************************9988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122034.93E-2159124No hitNo description
Gene3DG3DSA:1.10.10.600.00160118IPR009057Homeodomain-like
PfamPF138372.3E-1560126No hitNo description
PROSITE profilePS500907.4861117IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDPFHHLNTS FSNPYHPLLS PSPPHHPHFP PLPPPPPPLP EAAPQQLQSS ASLERERLPQ  60
WSHAETAAFL AVRAELDHSF LTTKRNKALW EFVSARLQGQ GFARTPDQCK SKWKNLVTRF  120
KGTEAAAAAA SGHPAPDADH ASAAAAAQQA RQFPFHDEMR RIFDARVERA QALERKRAKG  180
KDVQKEDDEG GGEGEDDDDE EELEAEMGEE EAGSRVPAEA RGGGGAKKRR RKHAAAAAAA  240
RARTADQGEV EAMLREFMRR QVEMEERWME AAEAREAERR AREEEWRNAM VALGEERLAL  300
VRRWREREEA WRARAEEREE RRHQLVAALL AKLGGGSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231KKRRRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550801e-70AK355080.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1015K12.
GenBankAK3759481e-70AK375948.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3110L24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805344.11e-132LOW QUALITY PROTEIN: trihelix transcription factor GT-3b-like
TrEMBLA0A3L6RAE40.0A0A3L6RAE4_PANMI; Uncharacterized protein
STRINGOGLUM05G02030.11e-103(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125953134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.12e-28Trihelix family protein