PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C01192.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 339aa MW: 37947.2 Da PI: 6.5877 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 63.4 | 5.3e-20 | 60 | 128 | 1 | 69 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +W++ e+ a +++r e+++++ ++k++k+lWe vs++++ +gf r+p qCk+kw+nl +r+k +++ + Pahal.C01192.1 60 QWSHAETAAFLAVRAELDHSFLTTKRNKALWEFVSARLQGQGFARTPDQCKSKWKNLVTRFKGTEAAAA 128 7*************************************************************9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 4.93E-21 | 59 | 124 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 0.001 | 60 | 118 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.3E-15 | 60 | 126 | No hit | No description |
PROSITE profile | PS50090 | 7.48 | 61 | 117 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MDPFHHLNTS FSNPYHPLLS PSPPHHPHFP PLPPPPPPLP EAAPQQLQSS ASLERERLPQ 60 WSHAETAAFL AVRAELDHSF LTTKRNKALW EFVSARLQGQ GFARTPDQCK SKWKNLVTRF 120 KGTEAAAAAA SGHPAPDADH ASAAAAAQQA RQFPFHDEMR RIFDARVERA QALERKRAKG 180 KDVQKEDDEG GGEGEDDDDE EELEAEMGEE EAGSRVPAEA RGGGGAKKRR RKHAAAAAAA 240 RARTADQGEV EAMLREFMRR QVEMEERWME AAEAREAERR AREEEWRNAM VALGEERLAL 300 VRRWREREEA WRARAEEREE RRHQLVAALL AKLGGGSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 226 | 231 | KKRRRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355080 | 1e-70 | AK355080.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1015K12. | |||
GenBank | AK375948 | 1e-70 | AK375948.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3110L24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805344.1 | 1e-132 | LOW QUALITY PROTEIN: trihelix transcription factor GT-3b-like | ||||
TrEMBL | A0A3L6RAE4 | 0.0 | A0A3L6RAE4_PANMI; Uncharacterized protein | ||||
STRING | OGLUM05G02030.1 | 1e-103 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12595 | 31 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 2e-28 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C01192.1 |