PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00161.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 291aa    MW: 32876.2 Da    PI: 6.1427
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00161.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.41.6e-19138202359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....STTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....dpkvveitYegeHnhe 59 
                     Dg +WrKYGqK+++++++prsYYrCt++   +C+++k v++++e     +p + +++Y+g+H+++
  Pahal.C00161.1 138 DGRQWRKYGQKHINKAKHPRSYYRCTYSkeqDCKATKTVQQQDEstgtdNPVMYTVVYHGQHTCK 202
                     999************************98889********98642222278899*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-21129202IPR003657WRKY domain
SuperFamilySSF1182901.7E-20132202IPR003657WRKY domain
SMARTSM007741.2E-28136203IPR003657WRKY domain
PfamPF031068.2E-23138202IPR003657WRKY domain
PROSITE profilePS5081114.183138178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MKQHNSRYLP QSSPSDHPSF VSDHPSAMKE IARGQSLVTQ LRAIVLPALQ ADQRYELVAQ  60
MFQDILDCSS KAITELQLQH QSDARPEDAL VDDKKRVRRI SSDDCIKEEG ATANPHHQHK  120
RRRSDDSVSL ETPVPHYDGR QWRKYGQKHI NKAKHPRSYY RCTYSKEQDC KATKTVQQQD  180
ESTGTDNPVM YTVVYHGQHT CKDNNGVDSG TDESETSTLS SSDSRSSIST TCTDPCDHQT  240
SLGDNKLIEK SADLVTKSMY EPLDMNPFAP LDLDSWELDA LLRFHLEPDN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-141382021069OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805419.10.0probable WRKY transcription factor 62
TrEMBLA0A2T8KGK40.0A0A2T8KGK4_9POAL; Uncharacterized protein
STRINGPavir.J39511.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-20WRKY DNA-binding protein 70