PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B03870.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRF

Protein Properties

Length: 267aa MW: 27873.1 Da PI: 4.6513

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B03870.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.5	2.4e-23	177	221	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + ++e Pahal.B03870.1 177 EPEPGRCRRTDGKKWRCWRNTIPNEKYCERHMHRGRKRPVQLVVE 221 69************************************9998875 PP
2	QLQ	54.3	4.1e-19	111	146	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k Pahal.B03870.1 111 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 146 8*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.7E-8	110	146	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	6.3E-12	111	145	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.922	111	146	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	22.801	177	221	IPR014977	WRC domain
Pfam	PF08879	9.4E-20	178	216	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MAAEGEAKNP SGGGGGGGGV DNPQVEAAPS VPAPAEGEAV LVAAQGTGQG PEGEKADQEG 60 EKDDGACRDL VLVEDPEVVA VEDPEEAAAT AALQEEMKAL VASIPDGAGA AFTAMQLQEL 120 EQQSRVYQYM AARVPVPTHL VFPIWKSVTG ASSEGAQKYP TLMGLATLCL DFGKNPEPEP 180 GRCRRTDGKK WRCWRNTIPN EKYCERHMHR GRKRPVQLVV EDDEPDSASG SKSTPGKATE 240 GAKKADDKSP SNKKLAVAAP AAVQST*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269\|PubMed:24854713}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042513	0.0	BT042513.1 Zea mays full-length cDNA clone ZM_BFb0310G14 mRNA, complete cds.
GenBank	BT087437	0.0	BT087437.1 Zea mays full-length cDNA clone ZM_BFb0076N13 mRNA, complete cds.
GenBank	EF515849	0.0	EF515849.1 Zea mays putative growth-regulating factor 10 (GRF10) mRNA, complete cds.
GenBank	EU960601	0.0	EU960601.1 Zea mays clone 226522 growth-regulating factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800926.1	0.0	growth-regulating factor 11-like
Swissprot	A5HEG9	1e-158	GRF10_MAIZE; GRF-interacting factor 10
TrEMBL	A0A2S3H2A3	0.0	A0A2S3H2A3_9POAL; Uncharacterized protein
STRING	Si030809m	1e-165	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6735	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-31	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Pahal.B03870.1

Publications ? help Back to Top
Soderlund C, et al. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. PLoS Genet., 2009. 5(11): p. e1000740 [PMID:19936069] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430] Zhang D, et al. GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize. Plant Cell, 2018. 30(2): p. 360-374 [PMID:29437990]