PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03671.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 214aa    MW: 22289.1 Da    PI: 8.2219
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03671.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_156.36.8e-18142194355
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                     +++r +r++kNRe+A rsR+RK+a++ eLe++v+ L++eN++L+ + e+l+  
  Pahal.B03671.1 142 SDRRKKRMIKNRESAARSRARKQAYVRELEREVQLLQQENESLRVKYEQLRVS 194
                     689******************************************99999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-14140204IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.151142192IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.0E-15142195No hitNo description
PfamPF001701.2E-15143194IPR004827Basic-leucine zipper domain
CDDcd147071.73E-22144191No hitNo description
SuperFamilySSF579597.5E-13144193No hitNo description
PROSITE patternPS000360147162IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAAMDLEDDE DIWGNTVSSP SASPPQPLAA AAAVSPCGAF ISTQLSLNSR LHLLSTAGGS  60
SPVGAGIYAA DGGRHHMDLG GGFRNAAASP APFFSAYNLD PGAGGVAPID AGAARSVLED  120
EMCLGPGAAA ASTWAGAVVG GSDRRKKRMI KNRESAARSR ARKQAYVREL EREVQLLQQE  180
NESLRVKYEQ LRVSVEVAVP VKKTLQRMPS APF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803630.11e-154ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A2S3H1W21e-152A0A2S3H1W2_9POAL; Uncharacterized protein
STRINGSi031077m1e-114(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97643044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.24e-17basic region/leucine zipper motif 27