PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02467.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 333aa    MW: 35299.1 Da    PI: 6.4439
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02467.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.13.1e-27126186158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+r++edp++++++Y+g+H++
  Pahal.B02467.1 126 VDDGHSWRKYGQKEILGTKHPRGYYRCTHRhsqGCLATKQVQRTDEDPTLFDVIYHGDHTC 186
                     59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.607121184IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-27123187IPR003657WRKY domain
SuperFamilySSF1182906.93E-25124186IPR003657WRKY domain
SMARTSM007743.8E-39126188IPR003657WRKY domain
PfamPF031064.4E-26127186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MESADGSNGG SGGLVVTELS HIKELVRQLD VHLGRSHDLC RHLTTQIFSI TERSISIITA  60
SSGLDAGARK RCAAGDAGLA SPFTATPTSD VADGPFKSTK KRKVMEKRKH QVRVSSPRGG  120
AGENPVDDGH SWRKYGQKEI LGTKHPRGYY RCTHRHSQGC LATKQVQRTD EDPTLFDVIY  180
HGDHTCVQRP PAAAPAAAGQ PEHNPDANSF LSLTAGLTVK TEGLPALAAD REGWSATAPF  240
YFSSTTPASV CPATAERSPF SAPSTSENWG VSPATSDSNH VASYLPFEDA EWRGQNELQE  300
VVSALVAAGA PPAPAVDGLD ELLDIDIASF FA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-23126186868OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586250.0KU058625.1 UNVERIFIED: Panicum miliaceum WRKY10-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.10.0probable WRKY transcription factor 30
TrEMBLA0A2S3GYW50.0A0A2S3GYW5_9POAL; Uncharacterized protein
STRINGPavir.Ba02545.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-36WRKY family protein