PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02025.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 515aa    MW: 54795.8 Da    PI: 5.2473
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02025.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.43.9e-2191431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWk..atgkdkev 92 
                     lppG+ F P+de  v +yL +++ g +l+++  i + d +++ P++L  + +++  e +fF++ +    +g+r++r  +  g W+  +t  + + 
  Pahal.A02025.1   9 LPPGLLFAPEDEVAVEHYLLPRLLGWQLPVDGLILDDDPLSAPPRELL-ERNGRGGEAFFFAEGQAMCGKGTRQKRtCAGGGWWEgqKTCAEGDK 102
                     79****************************999**************6.44566779*******************4455666763333333333 PP

             NAM  93 lsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     l+      ++e+ + kk L f+ g a +  +t Wvmhey++
  Pahal.A02025.1 103 LRVpgggrGREAAWRKKALNFHCGGAGRKGSTGWVMHEYAV 143
                     3336778777789*********99998889*********86 PP
2NAM69.11.2e-211803121128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk..dkev 92 
                     lppGf F P+d ++v +yL ++v g++l+l+  i + d  ++ Pw+L  + ++++++ +fF+  + k+++g+r++r  +  g+W+   +  d e 
  Pahal.A02025.1 180 LPPGFLFAPEDGDVVACYLLPRVLGQPLPLDGLILDDDPRSAPPWELL-ERNGRREDAFFFALGQVKSSKGSRQKRtCVGGGFWNGERTcvDGEK 273
                     79****************************999**************7.445677899******************77889***95443223322 PP

             NAM  93 lsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +   + k+ L f +  a +  +t Wvmhey++
  Pahal.A02025.1 274 --LlipglagAEVMEWRKRALSFQH--AGDKGSTGWVMHEYAI 312
                     ..133467655555889999**983..444448********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.1E-294161IPR003441NAC domain
PROSITE profilePS5100526.1329162IPR003441NAC domain
PfamPF023653.9E-1310142IPR003441NAC domain
SuperFamilySSF1019413.27E-29173331IPR003441NAC domain
PROSITE profilePS5100526.726180331IPR003441NAC domain
PfamPF023651.6E-13181311IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MAAACVAGLP PGLLFAPEDE VAVEHYLLPR LLGWQLPVDG LILDDDPLSA PPRELLERNG  60
RGGEAFFFAE GQAMCGKGTR QKRTCAGGGW WEGQKTCAEG DKLRVPGGGR GREAAWRKKA  120
LNFHCGGAGR KGSTGWVMHE YAVTAPEDLA RSPLRLYHIR LSGYGRKQSG AMEVPRALGL  180
PPGFLFAPED GDVVACYLLP RVLGQPLPLD GLILDDDPRS APPWELLERN GRREDAFFFA  240
LGQVKSSKGS RQKRTCVGGG FWNGERTCVD GEKLLIPGLA GAEVMEWRKR ALSFQHAGDK  300
GSTGWVMHEY AITAPDHLAE SQLRLFRIRF SGHGKKRKRA EADPSADESA APTAARRRVA  360
EDDTLLGMLM PSSDPICSSV VLADQADGNG VNGAELHAAP ATVSAGQDLT SGMDTSWDGF  420
LENFDIDELL RSIGDLPSPS PGVLPAVTDL GAYLDADAEV SSFFTQTAAA AAAPPYAGFG  480
AGLVAPSAPG MHHGCTDPAD SFFFPEPNQS YAAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-11814314140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333339GKKRKRA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813463.10.0uncharacterized protein LOC112890817
TrEMBLA0A2T7F7A70.0A0A2T7F7A7_9POAL; Uncharacterized protein
STRINGSi019248m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.14e-09NAC domain containing protein 4