PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PSME_00017961-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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Family | WOX | ||||||||
Protein Properties | Length: 145aa MW: 17200.3 Da PI: 10.4973 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47 | 4.3e-15 | 37 | 94 | 3 | 55 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 +R+++t+eq+ e+ + + ++ps+++ ++ ++l +++ + V++WFqNr+a e PSME_00017961-RA 37 SRWNPTNEQIALVEATYSQgIHTPSHDQVDQIVSRLrmygNIERNSVFYWFQNRKASE 94 8*****************99***********************************976 PP | |||||||
2 | Wus_type_Homeobox | 86.7 | 2.6e-28 | 35 | 98 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Pt+eQi + e+ y++G+ tP+++++ +i ++L+ yG+ie + VfyWFQNrka e q+q PSME_00017961-RA 35 SSSRWNPTNEQIALVEATYSQGIHTPSHDQVDQIVSRLRMYGNIERNSVFYWFQNRKASEEQRQ 98 689********************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-6 | 17 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.042 | 32 | 97 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-9 | 33 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 0.0015 | 34 | 101 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-12 | 37 | 94 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MQLSQSTSTH RFLLKKVQEK DQGSREMAEG QSSTSSSRWN PTNEQIALVE ATYSQGIHTP 60 SHDQVDQIVS RLRMYGNIER NSVFYWFQNR KASEEQRQKR ERMASINHFL QEPSLARKSR 120 KNSKKLYDIC FNLRNKIWNI SFHYN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007016457.1 | 6e-30 | PREDICTED: WUSCHEL-related homeobox 2 | ||||
Swissprot | Q6X7K1 | 7e-27 | WOX2_ARATH; WUSCHEL-related homeobox 2 | ||||
TrEMBL | Q14FJ6 | 2e-34 | Q14FJ6_PICAB; Homeodomain transcription factor | ||||
STRING | EOY34076 | 2e-29 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 3e-29 | WUSCHEL related homeobox 2 |
Publications ? help Back to Top | |||
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