PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK29685.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 487aa    MW: 51278.9 Da    PI: 8.0494
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK29685.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH406.3e-135075227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               ++ +C f++rtG+C yG+rC+F+H++
  PK29685.1 50 DEDNCIFYMRTGYCGYGSRCRFNHPR 75
               6789********************96 PP
2zf-CCCH39.11.3e-1297121327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C++++rtGtCk+G++Ck++H++
  PK29685.1  97 QPVCQYYMRTGTCKFGASCKYHHPR 121
                689********************96 PP
3zf-CCCH32.21.8e-10142166226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C ++ +tG+Ck+G +CkF+H+
  PK29685.1 142 GEKECTYYVKTGQCKFGVSCKFHHP 166
                7899********************8 PP
4zf-CCCH38.91.5e-12309335127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C++++rtG Ck+G++C+++H+p
  PK29685.1 309 PGQPECQYYMRTGDCKFGSSCRYHHPP 335
                5789*********************97 PP
5zf-CCCH35.61.5e-11357380326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +lC+++a+ G Ck+G+ CkF H+
  PK29685.1 357 APLCSHYAQRGACKFGPACKFDHP 380
                68*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5734876IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-44875IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-105075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-75077IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-65475IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-694121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.23494122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-696121IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-1097121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-599121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577140168IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5140167IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8142166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6143167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286308336IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6308335IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10310335IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-5312335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4314334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.751354382IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7354381IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-9357380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6357384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5359381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MERYGRNTAE GGSQSDPSPE WAGTGPETGL EESVWQLGIG GEESYPERPD EDNCIFYMRT  60
GYCGYGSRCR FNHPRDRAAV IGVARAGGGE YPERHGQPVC QYYMRTGTCK FGASCKYHHP  120
RQGGGSSGPV SLNYDGYPLR PGEKECTYYV KTGQCKFGVS CKFHHPHPAG MPLPLPSPAA  180
QVPPAPATPV HGPTLYPPMA SPSGSSSQQY GVVVARSSMV QGSYVQSPYG PMLISPGMVP  240
FPGWGGSYMT SISPVPSHSN QPPAGSGQVY GLSQVSHQAP PYTGTYQPVA SPTVPSVSSQ  300
KELSYPERPG QPECQYYMRT GDCKFGSSCR YHHPPDINSP KTTVVLSSAG LPMRPGAPLC  360
SHYAQRGACK FGPACKFDHP LETLSYSPSA SSLSDMPVAP YPVGSSVGTL APSSSSSDLR  420
PELTPVSTKD STSARMSSSV SSSSGSVGST FSKGGPVSHA SLQQPAQNPG TSTGGNTSTS  480
SEPRTSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892705.10.0zinc finger CCCH domain-containing protein 34 isoform X1
SwissprotQ6NPN31e-154C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2P5E4400.0A0A2P5E440_PARAD; Zinc finger, CCCH-type
STRINGEMJ240040.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-136C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]