PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK27389.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 246aa MW: 26709 Da PI: 5.5967

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK27389.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.7	3.4e-42	58	157	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+ +l+a+la++++e PK27389.1 58 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEAGARIRDPVYGCAGAICQLQKQVGELQAQLAKAQAE 157 7**********************************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.879	57	158	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-42	58	155	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MECSTETNTT TTTSSSPPLA AASQYSSNSS SSSPDHQQHL QTLNPNPNPV ATPVVLSPCA 60 ACKILRRRCA DKCVLAPYFP PTEPAKFTIA HRVFGASNII KFLQELPESQ RADAVSSMVY 120 EAGARIRDPV YGCAGAICQL QKQVGELQAQ LAKAQAEVVN MQCQQANLVA ILCMEMAQSQ 180 QGFNNNNNNN LLSPQQNSLV IDHGLMINNN NNTTTTPLMI SNQNNNNSLS FLDDINLGSL 240 WEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-43	52	165	5	118	LOB family transfactor Ramosa2.1
5ly0_B	3e-43	52	165	5	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010104136.1	1e-105	LOB domain-containing protein 1
Swissprot	Q9SK08	1e-73	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	W9SCB7	1e-104	W9SCB7_9ROSA; Uncharacterized protein
STRING	XP_010104136.1	1e-104	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	2e-63	LOB domain-containing protein 11