PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK26982.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 333aa    MW: 36806 Da    PI: 5.9657
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK26982.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-32164221259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+
  PK26982.1 164 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTTVITTYEGQHCHH 221
                8******************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-33148222IPR003657WRKY domain
SuperFamilySSF1182906.8E-28155221IPR003657WRKY domain
PROSITE profilePS5081129.746158223IPR003657WRKY domain
SMARTSM007741.4E-37163222IPR003657WRKY domain
PfamPF031063.4E-25164221IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDDEDKLKSD LGTGGGPVTQ FGSQSSWTHF GGLDSDDGGY FISAADRETS LLSEFGWNFH  60
TEDDDQLRGA TEQERAWELE RRTTADLAES STVTERAARI GSTTSNNPSV SSSSSEDPTE  120
KSTGSDEKPP PDQIPNNKVK KKGQKRIRQP RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS  180
PFPRSYYRCT NSKCTVKKRV ERSSEDPTTV ITTYEGQHCH HTVGFPRGGI LAHHELASFP  240
GSHLPPPKFY YPAIDSTPSL NTESSDNNTY NYNNNPDVTT NNLIDHQSNQ VVTSVAGDSG  300
HIILKEPSST TSQQVSADQG LLGDIVPPGM RNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-25153220774Probable WRKY transcription factor 4
2lex_A2e-25153220774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00067PBMTransfer from AT1G69310Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109362.11e-112probable WRKY transcription factor 57
RefseqXP_024029869.11e-112probable WRKY transcription factor 57
RefseqXP_024029871.11e-112probable WRKY transcription factor 57
RefseqXP_024029872.11e-112probable WRKY transcription factor 57
RefseqXP_024029873.11e-112probable WRKY transcription factor 57
SwissprotQ9C9832e-74WRK57_ARATH; Probable WRKY transcription factor 57
TrEMBLA0A2P5E2841e-141A0A2P5E284_PARAD; WRKY domain containing protein
STRINGXP_010109362.11e-111(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108143140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-64WRKY DNA-binding protein 57
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jiang Y,Qiu Y,Hu Y,Yu D
    Heterologous Expression of AtWRKY57 Confers Drought Tolerance in Oryza sativa.
    Front Plant Sci, 2016. 7: p. 145
    [PMID:26904091]
  3. Jiang Y,Yu D
    The WRKY57 Transcription Factor Affects the Expression of Jasmonate ZIM-Domain Genes Transcriptionally to Compromise Botrytis cinerea Resistance.
    Plant Physiol., 2016. 171(4): p. 2771-82
    [PMID:27268959]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]