PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK22200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GeBP | ||||||||
Protein Properties | Length: 131aa MW: 15332.2 Da PI: 11.1917 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 57.7 | 3.4e-18 | 16 | 106 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 +++rl++e+Dei lL+ +++ ++ +s+ ++ e ++ +++ k+++sq+++K+rrL+ K++++ ++ + ++++hd+ ++++kiWg+ PK22200.1 16 NSRRLFTESDEIHLLKSFLKLSKQSS-PSSAITSPNLERIQTRLDHKFTHSQIIDKLRRLRIKYHREART-----KSLIKTPHDTRLHKIARKIWGK 106 579******************65554.4555788999****************************99998.....6789****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-16 | 18 | 105 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
XLRSPTKSPP PSSNGNSRRL FTESDEIHLL KSFLKLSKQS SPSSAITSPN LERIQTRLDH 60 KFTHSQIIDK LRRLRIKYHR EARTKSLIKT PHDTRLHKIA RKIWGKKAQQ LPKEEHAKEE 120 KEKEKEMLKG X |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015873627.1 | 2e-35 | probable transcription factor At1g61730 | ||||
TrEMBL | A0A2P5C2Q7 | 1e-32 | A0A2P5C2Q7_PARAD; Uncharacterized protein | ||||
STRING | XP_006424433.1 | 5e-30 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18296 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 2e-09 | DNA-binding storekeeper protein-related transcriptional regulator |