PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK22182.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 483aa MW: 54827.2 Da PI: 7.0062

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK22182.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.4	8.4e-51	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi+evd++k+ePwd+++k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk ++s + PK22182.1 11 VPPGFRFHPTEEELLHYYLRKKVAFEKIDL-DVIREVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYS-GF 108 69**************************.9***********964444222455**********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +gl+ktLvfykgrap+g+k+dW+mheyrl PK22182.1 109 KRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 139 99*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-56	7	175	IPR003441	NAC domain
PROSITE profile	PS51005	56.002	11	175	IPR003441	NAC domain
Pfam	PF02365	1.8E-26	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MNLSINGQSQ VPPGFRFHPT EEELLHYYLR KKVAFEKIDL DVIREVDLNK LEPWDIQEKC 60 KIGSTPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKIIYSGFKR IGLRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD ESSTTTHDST VISNSQLSGD SVSEDGWVVC RVFKKKNYQK 180 SLDSPKGTTS SSMSGDSNII MNNNNNNIHH SIHQQHQHHH HQMSYPKNDG VLDQILHYMG 240 RTCKLENDSL TNNIATTERY HHMSKNTAMG GGGGEAVFGH HHQNFMHLPR LQEIITPTNN 300 NNNNTTNTTT LPSMPLLNDN VSPYKAYNNN NNNSTTTTTT NYDDESYDML METEPASTSD 360 HPKPGSNNRV NDWIALDRLV ASQLNGHHHN REEETTTASK AQLSNCFGDI QNVMSFCTEQ 420 DENDVVQLSS YPYLRSRTTS SSNIIVNNNN NQNYNENDLI WSSFGRSSSS PSSSSDPLCH 480 LSV

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MNLSINGQSQ VPPGFRFHPT EEELLHYYLR KKVAFEKIDL DVIREVDLNK LEPWDIQEKC  60
KIGSTPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKIIYSGFKR IGLRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD ESSTTTHDST VISNSQLSGD SVSEDGWVVC RVFKKKNYQK  180
SLDSPKGTTS SSMSGDSNII MNNNNNNIHH SIHQQHQHHH HQMSYPKNDG VLDQILHYMG  240
RTCKLENDSL TNNIATTERY HHMSKNTAMG GGGGEAVFGH HHQNFMHLPR LQEIITPTNN  300
NNNNTTNTTT LPSMPLLNDN VSPYKAYNNN NNNSTTTTTT NYDDESYDML METEPASTSD  360
HPKPGSNNRV NDWIALDRLV ASQLNGHHHN REEETTTASK AQLSNCFGDI QNVMSFCTEQ  420
DENDVVQLSS YPYLRSRTTS SSNIIVNNNN NQNYNENDLI WSSFGRSSSS PSSSSDPLCH  480
LSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	9e-49	11	177	15	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010100216.1	1e-171	NAC domain-containing protein 43
Swissprot	Q84WP6	1e-110	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	A0A2P5ANS9	0.0	A0A2P5ANS9_TREOI; NAC domain containing protein
STRING	XP_010100216.1	1e-170	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3031	33	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	9e-98	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]