PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK21037.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | FAR1 | ||||||||
Protein Properties | Length: 173aa MW: 20418.1 Da PI: 7.2497 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.9 | 6e-22 | 67 | 152 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA++vGF +rksk +k ++g +++rt++Cs+eg+ +++k++ rr++aetr gC a++kv +++gk++v ++ eH+H PK21037.1 67 NFYNAYAYKVGFGIRKSKRYKD-KHGVMINRTLYCSCEGYCQNDKRD-AIVRRHHAETRFGCLARMKVDCRQTGKYHVVEIIPEHTHV 152 6*****************9998.7788****************9999.9999***********************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-18 | 67 | 152 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MDDHNKTMEI EFQSRRKLEF ERGEEEINED KLVDNNIKSI EVIHFEISEK LIPNIGMEFE 60 TEDEAYNFYN AYAYKVGFGI RKSKRYKDKH GVMINRTLYC SCEGYCQNDK RDAIVRRHHA 120 ETRFGCLARM KVDCRQTGKY HVVEIIPEHT HVTSTVGFCA LNKTHSNIIR FTN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015897844.1 | 4e-47 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_024930861.1 | 3e-46 | protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_008246048.1 | 4e-36 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-24 | FAR1 family protein |