PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19243.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 82aa    MW: 9501.26 Da    PI: 4.9502
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19243.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind45.52e-143681247
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkh 47
                  Fl k+y ++ed++++e+isw+++g++fvv+++ efa+++Lp+ F+h
     PK19243.2 36 FLLKTYMLVEDPATDEVISWNAQGTAFVVWQPAEFARDLLPTLFRH 81
                  9********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-162981IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.65E-133181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-43282IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-113681IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-73659IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-77482IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
XNNNIDIMDH HNNDHVLISD QKGLLEYMRK SSPPPFLLKT YMLVEDPATD EVISWNAQGT  60
AFVVWQPAEF ARDLLPTLFR HX
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024189461.12e-36heat stress transcription factor B-3
SwissprotO222305e-24HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2P5EMY33e-36A0A2P5EMY3_TREOI; Heat shock transcription factor
STRINGXP_008244246.11e-35(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-26heat shock transcription factor B3