PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK17751.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C3H

Protein Properties

Length: 708aa MW: 77373 Da PI: 7.3265

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK17751.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.8	7.8e-08	281	301	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg PK17751.2 281 PCPEFRK-GACRRGDLCEYAHG 301 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	8.6E-20	8	172	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.82E-17	55	152	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.3E-9	57	126	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	17.131	57	157	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.082	57	87	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.3E-5	58	73	IPR002110	Ankyrin repeat
CDD	cd00204	4.83E-14	59	139	No hit	No description
PROSITE profile	PS50088	12.342	92	127	IPR002110	Ankyrin repeat
SMART	SM00248	3.7E-5	92	124	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.3E-5	111	125	IPR002110	Ankyrin repeat
SMART	SM00356	2.9E-5	276	302	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.568	281	303	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-5	281	301	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.4E-4	309	339	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	40	311	334	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
MNGLIVKTED SLSNLLELAS DNDVDGFKRS IEQDSSSIND VGVWYSRRKG AKHIVSEYRT 60 PLMVAATYGS VDVLKLVLSC PEVDVNLSCG VHKSTALHCA ASGGSVNALD VVKLLLSAGA 120 DPNLMDVNGH RPVDVIVIHP KLQGMKAIFE ELLSKDAFGG SGVGEHPMHL SINCSKSDSS 180 TLSSSPDNEV RSPHSVSSPV ISKMSDLPHI STLEKKEYPI DPSIPDIKNS IYATDEFRMF 240 SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPEFRKGAC RRGDLCEYAH 300 GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHRTEELRPL YVSTGSGVPS PRASASGPNG 360 PSVMDMAAAL SLFPGSPSSV SGMSPSPFTQ PMSPSANGMS HSSMAWPQPN VPTLHLPGSN 420 LQSSRLRSSL SARDIPPEDL NMLLELDAQQ QLFNDMNCFS QPRMSSASVN RSCRSKTLTP 480 SNLEELFSAE ISSSPRYSDH MTASTFSPTR KSALLNQFQH QQQCMLSPIN TAVMSPKTVD 540 HPLLQASFGV QSPGRMSPRS VEPISPMSAR LSAFSQREQQ QHQQQLRSLS SRELGSNHTS 600 SVVGSPVNWS KWGSPNGKLD WSVNNGEDHN RMKRSSSLEF GNNNGEEPDL SWVQSLVKES 660 PPEMMKDKAA PSVTNGAPAS GEGLNSKSKI ESIDHSVLGA WVEQMQLA

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

MNGLIVKTED SLSNLLELAS DNDVDGFKRS IEQDSSSIND VGVWYSRRKG AKHIVSEYRT  60
PLMVAATYGS VDVLKLVLSC PEVDVNLSCG VHKSTALHCA ASGGSVNALD VVKLLLSAGA  120
DPNLMDVNGH RPVDVIVIHP KLQGMKAIFE ELLSKDAFGG SGVGEHPMHL SINCSKSDSS  180
TLSSSPDNEV RSPHSVSSPV ISKMSDLPHI STLEKKEYPI DPSIPDIKNS IYATDEFRMF  240
SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPEFRKGAC RRGDLCEYAH  300
GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHRTEELRPL YVSTGSGVPS PRASASGPNG  360
PSVMDMAAAL SLFPGSPSSV SGMSPSPFTQ PMSPSANGMS HSSMAWPQPN VPTLHLPGSN  420
LQSSRLRSSL SARDIPPEDL NMLLELDAQQ QLFNDMNCFS QPRMSSASVN RSCRSKTLTP  480
SNLEELFSAE ISSSPRYSDH MTASTFSPTR KSALLNQFQH QQQCMLSPIN TAVMSPKTVD  540
HPLLQASFGV QSPGRMSPRS VEPISPMSAR LSAFSQREQQ QHQQQLRSLS SRELGSNHTS  600
SVVGSPVNWS KWGSPNGKLD WSVNNGEDHN RMKRSSSLEF GNNNGEEPDL SWVQSLVKES  660
PPEMMKDKAA PSVTNGAPAS GEGLNSKSKI ESIDHSVLGA WVEQMQLA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015881700.1	0.0	zinc finger CCCH domain-containing protein 30
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2P5E711	0.0	A0A2P5E711_TREOI; Transmembrane protein
STRING	XP_010088235.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1732	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]