PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK16550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 27714.6 Da PI: 7.1013 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 10 | 55 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde+l +vkq+ ++W+ I++ ++ gR++k+c++rw + PK16550.1 10 KGPWSPEEDEKLQSLVKQHSARNWSVISKSIP-GRSGKSCRLRWCNQ 55 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 57.3 | 3.6e-18 | 64 | 106 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed++++da+ ++G++ W+tIar + gRt++ +k++w++ PK16550.1 64 PFTAMEDQIIIDAHSKHGNK-WATIARLLE-GRTDNAIKNHWNST 106 89******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.46 | 5 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.39E-31 | 7 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-15 | 9 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-17 | 10 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 11 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.12E-14 | 12 | 54 | No hit | No description |
PROSITE profile | PS51294 | 25.965 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-15 | 61 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-11 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 64 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-14 | 64 | 106 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MESLLSRKVK GPWSPEEDEK LQSLVKQHSA RNWSVISKSI PGRSGKSCRL RWCNQLSPEV 60 KHRPFTAMED QIIIDAHSKH GNKWATIARL LEGRTDNAIK NHWNSTLKRK CSSSENDDGD 120 DDETSNPSRK RFASGGGGSD RPVSVQGNSC SSGGSESGSD DACDVISNET NFFPVYSQQL 180 LNRSLSPQEH VYNQSESFTD PFTQLTLSLP GSSTKSEKTN SLKFGPEFTR WLQETIRKEV 240 EDYMANIV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-39 | 9 | 113 | 6 | 110 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096284.2 | 3e-77 | transcription factor MYB44 | ||||
Swissprot | O23160 | 2e-63 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A2P5CAH6 | 4e-81 | A0A2P5CAH6_TREOI; MYB transcription factor | ||||
STRING | XP_010096284.1 | 9e-77 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 4e-61 | myb domain protein 73 |
Publications ? help Back to Top | |||
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