PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16045.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 506aa    MW: 56788.9 Da    PI: 7.9542
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16045.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1053.9e-33197254260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                +DgynWrKYGqK+vkgse+prsYY+Cts +Cp+kkkvers  d++++ei+Y+g+Hnh+k
  PK16045.1 197 EDGYNWRKYGQKQVKGSENPRSYYKCTSVNCPMKKKVERSL-DGQITEIVYRGNHNHPK 254
                7****************************************.***************85 PP
2WRKY1079.5e-34353411159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d ++v++tYeg+Hnh+
  PK16045.1 353 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASHDMRAVITTYEGKHNHD 411
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-27190255IPR003657WRKY domain
PROSITE profilePS5081124.122191255IPR003657WRKY domain
SuperFamilySSF1182907.85E-25193255IPR003657WRKY domain
SMARTSM007743.7E-36196254IPR003657WRKY domain
PfamPF031063.0E-25197253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-38338413IPR003657WRKY domain
SuperFamilySSF1182901.57E-29345413IPR003657WRKY domain
PROSITE profilePS5081138.779348413IPR003657WRKY domain
SMARTSM007749.9E-40353412IPR003657WRKY domain
PfamPF031065.6E-26354411IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MNNNNNINIR QEENSSLTSW GLSDQNGNND FSSFKTLQPN PLPNPNPLSP SSFLAITSSG  60
FSPTGFLNSP MFLSSSNALP SPTTGAFTGQ TFDWRSNSIS KDKQQQIEEE DKFFSDFSFQ  120
TRTGPVSMEK SMERPQQEQQ QEWQFDFNKT TNQISLPIEK KEVKSEYPSS SSTSELKIPQ  180
THHYAQPSQY VREQKSEDGY NWRKYGQKQV KGSENPRSYY KCTSVNCPMK KKVERSLDGQ  240
ITEIVYRGNH NHPKPQSTRR SSSSHNIIIN PTNSDHSVQN LGLHEDCSSD SIGEEGFDRN  300
SPSFNLVEDN EDNEPEAKRW KGENENEVFS ASGNRTVKEP RVVVQTTSEI DILDDGYRWR  360
KYGQKVVKGN PNPRSYYKCT SPGCPVRKHV ERASHDMRAV ITTYEGKHNH DVPAARGSSS  420
YAMNRPAISN DVVTTMPHRP MPLVNNNSNN NNNNATTNPS NYATSVPNAR LPNSVTNQTP  480
YTLQMLQHGS GSFGLSGGFG KSNPPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-35197414878Probable WRKY transcription factor 4
2lex_A2e-35197414878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093567.20.0probable WRKY transcription factor 33 isoform X2
SwissprotQ6B6R41e-116WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2P5BXQ90.0A0A2P5BXQ9_PARAD; WRKY domain containing protein
STRINGXP_010093567.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF107734114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-106WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]